Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq38187 123 2e-23 seq39894 114 9e-21 seq2470 109 4e-19 seq18352 102 6e-17 seq27679 98.7 7e-16 >seq38187 Length=9425 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATC 43968 |||||||||||| || ||| ||||||||||| ||||||||| | || ||| | || Sbjct 3198 TAACACCAAATGAAGTGTGGATTCTTTTTGAATGTTATAATCGCTCAAGGTACGGCCGTC 3139 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 | ||||||||| || || || || || ||||| || ||| | || | |||||||||||| Sbjct 3138 TTTCAATTGTTTACCGGCGAAGATTAATCGTTGTTGATCCGGTGGGATACCTTCTTTATC 3079 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 ||||| ||||| | ||| |||||| ||||| || | | || ||||| Sbjct 3078 CTGTATTTTAGCCTTGACGTTTTCAATAGTATCGCATGGCTCGACTTTCAATGTGATTGT 3019 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||||||||| || || || || |||||||| Sbjct 3018 TTTACCGGTTAGCGTTTTAACGAAAATTTGCAT 2986 >seq39894 Length=23042 Score = 114 bits (126), Expect = 9e-21 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATC 43968 ||||||||| || || ||| |||||| |||||||||||||| | || ||| | || Sbjct 11574 TAACACCAAGTGAAGTGTGGACTCTTTCTGAATATTATAATCACTCAAGGTACGGCCGTC 11633 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 ||||||||||| || || || || || ||||||||||| | || | ||||||||||| Sbjct 11634 TTCCAATTGTTTACCGGCGAAGATTAATCGTTGCTGGTCGGGTGGGATGCCTTCTTTATC 11693 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 | ||||| ||| || | | | ||||| | ||| || || || | || || || Sbjct 11694 TTGTATTTTCGCTTTTACGTTTTCGATCGTATCCGACGGTTCGACTTCCAAAGTGATGGT 11753 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||| ||||| | ||| || || || || ||||| Sbjct 11754 TTTTCCGGTGAGAGTTTTTACGAAAATCTGCAT 11786 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATC 43968 ||| |||||||| || || || |||||||||||||||||| | | ||| |||| Sbjct 12030 TAAGACCAAATGAAGAGTAGATTCCTTTTGAATATTATAATCGCTGAGAGTACGGCCATC 12089 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 || || |||||||| || || ||||| | |||||| || | || | |||||||| || Sbjct 12090 TTCTAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCAGGTGGAATGCCTTCTTTGTC 12149 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 ||||||| ||| || | | | ||||| | |||||| || || | || || || Sbjct 12150 CTGAATTTTTGCTTTAACGTTTTCGATCGTATCGGACGGCTCGACTTCCAAAGTGATGGT 12209 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || ||||| | ||| || || || |||||||| Sbjct 12210 CTTGCCGGTGAGAGTTTTAACGAAGATTTGCAT 12242 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||| ||| || || || ||||| |||||||| ||| | ||| ||| |||| ||| Sbjct 11806 ACCAGATGGAGGGTTGATTCCTTTTGGATATTATAGTCGCTCAATGTACGGCCATCTTCC 11865 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 |||||||| || || || || || | ||| |||||| | || | |||||| |||||| | Sbjct 11866 AATTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCCGGTGGGATACCTTCCTTATCTTGA 11925 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| ||| || | ||| || || | || || || || | |||||| ||||| Sbjct 11926 ATTTTGGCTTTCACATTTTCAATCGTGTCGGATGGTTCTACTTCCAACGTAATAGTTTTT 11985 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || | || || || || |||||||| Sbjct 11986 CCTGTGAGCGTTTTTACGAAAATTTGCAT 12014 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATC 43968 ||| |||||||| || || || |||||||||||||||||| | | || | || Sbjct 12486 TAAGACCAAATGAAGAGTAGATTCCTTTTGAATATTATAATCGCTGAGAGTTCGACCGTC 12545 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 |||||||||||||| ||||| ||||| ||||| || || | || | |||||||| || Sbjct 12546 TTCCAATTGTTTTCCGGCAAAGATCAATCGTTGTTGATCAGGTGGAATGCCTTCTTTGTC 12605 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 ||||||| ||| || | | | ||||| | ||| || || || | || || || Sbjct 12606 CTGAATTTTTGCTTTTACGTTTTCGATCGTATCGGACGGTTCGACTTCCAAAGTGATGGT 12665 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||| || || | || || ||||| || ||||| Sbjct 12666 TTTTCCAGTGAGCGTTTTTACAAAAATCTGCAT 12698 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||| ||| || || || |||||||||||||| ||| | || ||| |||| ||| Sbjct 12718 ACCAGATGGAGGGTTGATTCCTTTTGAATATTATAGTCGCTCAACGTACGGCCATCTTCC 12777 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 |||||||| || || || || || | ||| |||||| | || | |||||| ||||| Sbjct 12778 AATTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCCGGTGGGATACCTTCCTTATCCTGG 12837 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| ||| || | | | || || | |||||| || || | || || || || Sbjct 12838 ATTTTAGCTTTCACGTTCTCGATCGTGTCGGACGGCTCGACCTCCAAAGTGATGGTCTTG 12897 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| | ||| || || || || ||||| Sbjct 12898 CCGGTGAGAGTTTTAACGAAGATCTGCAT 12926 >seq2470 Length=523 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATC 43968 ||| |||||||| || || ||||||||||||||||||||| | | ||| |||| Sbjct 249 TAAGACCAAATGAAGAGTCGATTCTTTTTGAATATTATAATCGCTGAGAGTACGGCCATC 308 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 || || |||||||| || || ||||| | |||||| || | || | |||||||| || Sbjct 309 TTCTAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCAGGTGGAATGCCTTCTTTGTC 368 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 ||||||| ||| || | | | ||||| | |||||| || || | || || || Sbjct 369 CTGAATTTTTGCTTTAACGTTTTCGATCGTATCGGACGGCTCGACTTCCAAAGTGATGGT 428 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || ||||| | ||| || || || |||||||| Sbjct 429 CTTGCCGGTGAGAGTTTTAACGAAGATTTGCAT 461 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||| ||| || || || ||||| |||||||| ||| | ||| ||| |||| ||| Sbjct 25 ACCAGATGGAGGGTTGATTCCTTTTGGATATTATAGTCGCTCAATGTACGGCCATCTTCC 84 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 |||||||| || || || || || | ||| |||||| | || | |||||| |||||| | Sbjct 85 AATTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCCGGTGGGATACCTTCCTTATCTTGA 144 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| ||| || | ||| || || | || ||||| || | ||||| ||||| Sbjct 145 ATTTTGGCTTTCACATTTTCAATCGTGTCGGATGGTTCCACTTCCAATGTAATAGTTTTT 204 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| | || || || || |||||||| Sbjct 205 CCGGTGAGCGTTTTTACGAAAATTTGCAT 233 >seq18352 Length=35742 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 ||||||||||| || ||||||||||| || ||||| ||| || | || || Sbjct 19971 ACCAAATGTAGGGTTGATTCTTTTTGAATGTTGTAATCCGACAATGTTCGGCCGTCTTCG 19912 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | |||||| || || || || | |||||||||||| |||| | ||| ||||||||| Sbjct 19911 AGTTGTTTACCGGCGAAAATGAGACGTTGCTGGTCCGGAGGGATACCCTCTTTATCTTGG 19852 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| ||||| | | | || || ||||| || |||| || || ||||| Sbjct 19851 ATTTTGGCCTTGACGTTTTCGATGGTGTCACTGGGCTCAACTTCGAGGGTGATGGTTTTG 19792 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||||||||| || || || |||||||| Sbjct 19791 CCGGTTAAAGTTTTAACGAAAATTTGCAT 19763 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||||||| | | |||||||| ||||| || ||||| || || || || Sbjct 20217 CCTCCTCTCAAACGAAGAACCAAATGGAGCGTAGATTCCTTTTGGATGTTGTAGTCAG-- 20160 Query 43955 AATTGACGCT--CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 || | || | || || | |||||||| || || || || |||||||||||| ||| Sbjct 20159 AAAGGGTTCTACCGTCTTCGAGCTGTTTTCCGGCGAAAATTAAACGTTGCTGGTCCGGAG 20100 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 ||| |||||||||||| ||||| ||||| | | | || || ||||| | Sbjct 20099 GTATGCCTTCTTTATCTTGGATTTTGGCCTTGACATTTTCGATGGTGTCACTGGGCTCTA 20040 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || | ||||| ||||| || |||||||| || || || |||||||| Sbjct 20039 CTTCCAGGGTAATCGTTTTGCCAGTTAAAGTTTTTACGAAAATTTGCAT 19991 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||||||||| | | | ||||| || || ||| ||||||||||| ||||| || Sbjct 19534 ACCTCCTCTGAGACGGAGGACCAAGTGGAGAGTGGATTCTTTTTGAATGTTATAGTCCGA 19475 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | || |||| || | |||||| || || || || | ||||||||||| | || Sbjct 19474 AAGTGTGCGGCCATCTTCGAGTTGTTTGCCGGCGAAAATGAGACGTTGCTGGTCGGGGGG 19415 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || ||||| ||| ||||||| ||||| | | | ||| || || || || Sbjct 19414 AATTCCCTCTTTGTCTTGAATTTTTGCCTTGACATTTTCTATAGTGTCGCTGGGTTCGAC 19355 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| ||| || ||||| || || || |||||||| || |||||||| Sbjct 19354 TTCGAGCGTGATCGTTTTGCCAGTCAAGGTCTTCACGAAAATTTGCAT 19307 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||||||||| | | | ||||| || || ||| |||||||| || || || ||| Sbjct 19762 ACCTCCTCTGAGACGGAGGACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCGG- 19704 Query 43954 TAATTGACGCT--CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGA 44011 || | || | || || | |||||| || || || || | ||||| ||||| | Sbjct 19703 -AAAGGGTTCTTCCGTCTTCGAGTTGTTTACCGGCGAAGATAAGACGTTGTTGGTCAGGT 19645 Query 44012 GGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCC 44071 |||| |||||| || || |||||| ||||| | ||| ||| || || || Sbjct 19644 GGTATACCTTCCTTGTCCTGAATTTTGGCCTTGACGTTCTCAATAGTGTCGCTTGGTTCG 19585 Query 44072 ACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || |||| ||| || |||||||||||||| || ||||| || |||||||| Sbjct 19584 ACTTCGAGCGTGATAGTTTTACCGGTTAATGTTTTCACGAAAATTTGCAT 19535 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || |||||||||| ||| |||||||| || |||||||| | | |||| Sbjct 20430 AATACCAAATGTAACGTAGATTCTTTTTGGATGTTATAATCCGAAAGCGTTCTGCCATCT 20371 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 || | ||||| || || || || | |||||||| || |||| | |||||||||||| Sbjct 20370 TCGAGCTGTTTGCCAGCGAAAATAAGACGTTGCTGATCGGGAGGAATGCCTTCTTTATCT 20311 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 |||||| ||||| | | | ||||| ||||| || |||| || |||||| Sbjct 20310 TGAATTTTAGCCTTGACGTTTTCGATGGTATCGCTAGGCTCGACCTCGAGAGTGATTGTT 20251 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || ||||| || || ||||| || || ||||| Sbjct 20250 TTTCCGGTCAAGGTTTTCACGAAAATCTGCAT 20219 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||||| |||| | |||||||||| || |||||||||||| || || || Sbjct 19306 ACCTCCTCGTAATCGGAGAACCAAATGTAAGGTCGACTCTTTTTGAATGTTGTAGTCTGA 19247 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | | || || | ||| ||||| || || ||||| |||||||| || | || Sbjct 19246 TAGGGTTCTACCGTCTTCGAGTTGCTTTCCGGCGAAAATCAAACGTTGCTGATCTGGCGG 19187 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 || |||||||||||| |||||| ||| || | ||| || || || || || Sbjct 19186 TATACCTTCTTTATCCTGAATTTTCGCTTTAACGTTTTCAATGGTGTCGCTTGGTTCAAC 19127 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| || || ||||| || || || || || || || || ||||| Sbjct 19126 CTCGAGGGTGATCGTTTTCCCAGTCAACGTTTTTACGAAGATCTGCAT 19079 >seq27679 Length=10833 Score = 98.7 bits (108), Expect = 7e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| |||||||| ||||| || || ||||| |||||||||||| | || | ||||| | Sbjct 2167 CATCTTCCAATTGCTTTCCAGCGAAGATCAAACGTTGCTGGTCCGGTGGGATGCCTTCCT 2108 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 ||||| || || || || || | ||| | ||||| || || || |||| |||| Sbjct 2107 TATCTTGGATCTTCTGCTTTACATTTTCAATCGAATCTGAGGGTTCGACTTCGAGGGTAA 2048 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | |||||||| || || || ||||| || || ||||| Sbjct 2047 TAGTTTTACCAGTCAATGTTTTCACGAAAATCTGCAT 2011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354488520226836