Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq39894 116 3e-21 seq2470 105 6e-18 seq18352 104 2e-17 seq38187 95.1 1e-14 >seq39894 Length=23042 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 19997 AACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCT 20056 || |||||||| || |||||||| ||||| || || ||||||| | |||| | ||| Sbjct 12487 AAGACCAAATGAAGAGTAGATTCCTTTTGAATATTATAATCGCTGAGAGTTCGACCGTCT 12546 Query 20057 TCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCG 20116 ||||||||||| || ||| | || | | |||||||| || | |||||||||||| Sbjct 12547 TCCAATTGTTTTCCGGCAAAGATCAATCGTTGTTGATCAGGTGGAATGCCTTCTTTGTCC 12606 Query 20117 GCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTT 20176 ||||||| ||| || | | | | |||| ||||| ||||| || |||||| Sbjct 12607 TGAATTTTTGCTTTTACGTTTTCGATCGTATCGGACGGTTCGACTTCCAAAGTGATGGTT 12666 Query 20177 TTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || || | |||||| |||||||| ||||| Sbjct 12667 TTTCCAGTGAGCGTTTTTACAAAAATCTGCAT 12698 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || ||||||| | |||| ||| || || ||||| ||||| || || || |||| | Sbjct 11788 CCACCACGTAACCGAAGGACCAGATGGAGGGTTGATTCCTTTTGGATATTATAGTCGCTC 11847 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | || |||||||||||||||||| || |||| | || ||||| || || Sbjct 11848 AATGTACGGCCATCTTCCAATTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCCGGTGGG 11907 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||| || || |||||| |||||| | ||| | ||| ||||| | Sbjct 11908 ATACCTTCCTTATCTTGAATTTTGGCTTTCACATTTTCAATCGTGTCGGATGGTTCTACT 11967 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||| ||||| ||||| || || | |||||| || |||||||||||| Sbjct 11968 TCCAACGTAATAGTTTTTCCTGTGAGCGTTTTTACGAAAATTTGCATT 12015 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 19997 AACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCT 20056 || |||||||| || |||||||| ||||| || || ||||||| | ||| |||| Sbjct 12031 AAGACCAAATGAAGAGTAGATTCCTTTTGAATATTATAATCGCTGAGAGTACGGCCATCT 12090 Query 20057 TCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCG 20116 || || ||||| || || | || | || || ||||| || | |||||||||||| Sbjct 12091 TCTAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCAGGTGGAATGCCTTCTTTGTCC 12150 Query 20117 GCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTT 20176 ||||||| ||| || | | | | |||| || || ||||| || ||||| Sbjct 12151 TGAATTTTTGCTTTAACGTTTTCGATCGTATCGGACGGCTCGACTTCCAAAGTGATGGTC 12210 Query 20177 TTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||||||| | ||||| || || |||||||| Sbjct 12211 TTGCCGGTGAGAGTTTTAACGAAGATTTGCAT 12242 >seq2470 Length=523 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || ||||||| | |||| ||| || || ||||| ||||| || || || |||| | Sbjct 7 CCACCACGTAACCGAAGGACCAGATGGAGGGTTGATTCCTTTTGGATATTATAGTCGCTC 66 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | || |||||||||||||||||| || |||| | || ||||| || || Sbjct 67 AATGTACGGCCATCTTCCAATTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCCGGTGGG 126 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||| || || |||||| |||||| | ||| | ||| |||||| | Sbjct 127 ATACCTTCCTTATCTTGAATTTTGGCTTTCACATTTTCAATCGTGTCGGATGGTTCCACT 186 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||| ||||| ||||| ||||| | |||||| || |||||||||||| Sbjct 187 TCCAATGTAATAGTTTTTCCGGTGAGCGTTTTTACGAAAATTTGCATT 234 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 19997 AACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCT 20056 || |||||||| || || ||||||||||| || || ||||||| | ||| |||| Sbjct 250 AAGACCAAATGAAGAGTCGATTCTTTTTGAATATTATAATCGCTGAGAGTACGGCCATCT 309 Query 20057 TCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCG 20116 || || ||||| || || | || | || || ||||| || | |||||||||||| Sbjct 310 TCTAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCAGGTGGAATGCCTTCTTTGTCC 369 Query 20117 GCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTT 20176 ||||||| ||| || | | | | |||| || || ||||| || ||||| Sbjct 370 TGAATTTTTGCTTTAACGTTTTCGATCGTATCGGACGGCTCGACTTCCAAAGTGATGGTC 429 Query 20177 TTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||||||| | ||||| || || |||||||| Sbjct 430 TTGCCGGTGAGAGTTTTAACGAAGATTTGCAT 461 >seq18352 Length=35742 Score = 104 bits (114), Expect = 2e-17 Identities = 165/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 19973 TATCATTTTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTG 20032 ||| | || || || || | | ||| |||||||||| |||||||||||||| ||||| Sbjct 20454 TATTAATTGCCACCGCGAAGTCGCAATACCAAATGTAACGTAGATTCTTTTTGGATGTTA 20395 Query 20033 TAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGA 20092 ||||| | ||| | |||||| | |||||||| || ||||||| | || ||| Sbjct 20394 TAATCCGAAAGCGTTCTGCCATCTTCGAGCTGTTTGCCAGCGAAAATAAGACGTTGCTGA 20335 Query 20093 TCGACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCA 20152 ||| || | ||||||||| || |||||| || || | | | | ||||| | Sbjct 20334 TCGGGAGGAATGCCTTCTTTATCTTGAATTTTAGCCTTGACGTTTTCGATGGTATCGCTA 20275 Query 20153 GGTTCCGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || || || | || || ||||| |||||||| ||||| || ||||| |||||| Sbjct 20274 GGCTCGACCTCGAGAGTGATTGTTTTTCCGGTCAAGGTTTTCACGAAAATCTGCATT 20218 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGA--ATCTT 20057 ||||| || || || ||||||||||| ||||| || || | | ||| | | ||||| Sbjct 19515 ACCAAGTGGAGAGTGGATTCTTTTTGAATGTTATAGTC--CGAAAGTGTGCGGCCATCTT 19458 Query 20058 CCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGG 20117 | | ||||||||| || |||| || | || || ||| ||| | || |||||||| Sbjct 19457 CGAGTTGTTTGCCGGCGAAAATGAGACGTTGCTGGTCGGGGGGAATTCCCTCTTTGTCTT 19398 Query 20118 CAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTT 20177 ||||||| || || | | | || |||| ||||| ||| | || || |||| Sbjct 19397 GAATTTTTGCCTTGACATTTTCTATAGTGTCGCTGGGTTCGACTTCGAGCGTGATCGTTT 19338 Query 20178 TGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||||| || || || ||||||||||| Sbjct 19337 TGCCAGTCAAGGTCTTCACGAAAATTTGCAT 19307 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||||||| | | |||||||||| || || |||||||| |||||||| || Sbjct 19305 CCTCCTCGTAATCGGAGAACCAAATGTAAGGTCGACTCTTTTTGAATGTTGTAGTCTGAT 19246 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| || ||||| | ||| || || || |||| | | || ||||| || Sbjct 19245 AGGGTTCTACCGTCTTCGAGTTGCTTTCCGGCGAAAATCAAACGTTGCTGATCTGGCGGT 19186 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||||| || |||||| ||| || | ||| | |||| ||||| Sbjct 19185 ATACCTTCTTTATCCTGAATTTTCGCTTTAACGTTTTCAATGGTGTCGCTTGGTTCAACC 19126 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211 || | ||| || ||||| || ||||||||||| || || || |||||||| Sbjct 19125 TCGAGGGTGATCGTTTTCCCAGTCAACGTTTTTACGAAGATCTGCATTTT 19076 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || || || ||||||||||| |||||||| ||| | ||| | ||||| Sbjct 19743 ACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCGGAAAGGGTTCTTCCGTCTTCG 19684 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | |||||| || || | ||||| | ||||| || || | ||||| ||||| | Sbjct 19683 AGTTGTTTACCGGCGAAGATAAGACGTTGTTGGTCAGGTGGTATACCTTCCTTGTCCTGA 19624 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| || || | ||| || |||| ||||| ||| | || || ||||| Sbjct 19623 ATTTTGGCCTTGACGTTCTCAATAGTGTCGCTTGGTTCGACTTCGAGCGTGATAGTTTTA 19564 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| || ||||| || ||||||||||| Sbjct 19563 CCGGTTAATGTTTTCACGAAAATTTGCAT 19535 >seq38187 Length=9425 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 19997 AACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCT 20056 ||||||||||| ||||| ||||||||||| ||||| ||||||| || || ||| Sbjct 3197 AACACCAAATGAAGTGTGGATTCTTTTTGAATGTTATAATCGCTCAAGGTACGGCCGTCT 3138 Query 20057 TCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCG 20116 | ||||||||| || || | || | | |||||||| || | |||||||| || Sbjct 3137 TTCAATTGTTTACCGGCGAAGATTAATCGTTGTTGATCCGGTGGGATACCTTCTTTATCC 3078 Query 20117 GCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTT 20176 ||||| || || | ||| || ||||| || || || || || || ||| Sbjct 3077 TGTATTTTAGCCTTGACGTTTTCAATAGTATCGCATGGCTCGACTTTCAATGTGATTGTT 3018 Query 20177 TTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || ||||| | |||||| || ||||||||||| Sbjct 3017 TTACCGGTTAGCGTTTTAACGAAAATTTGCAT 2986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419245312088817