Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq47140 105 6e-18 seq24804 98.7 9e-16 >seq47140 Length=38879 Score = 105 bits (116), Expect = 6e-18 Identities = 159/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 13173 CTTCATCTCTACTTATTAGCTCGTT--TGAAAATGTTAGACCCGGCATAAGCCCTCGTTT 13230 |||| ||||| ||||| || || ||||| || | || |||||||| |||| || Sbjct 14731 CTTCGTCTCTCGATATTAATTCATTACTGAAA--GTCAATCCAGGCATAAGACCTCTCTT 14674 Query 13231 TTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAA 13290 || | ||||||||| || ||||| |||||||| || |||||||| || |||||||| Sbjct 14673 CTTGAGCCAAAATATCGCCGCAAAACTTCCCGAAAAGAAGATTCCTTCGACAGCTGCAAA 14614 Query 13291 CGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTT 13350 |||||| | |||||| ||| | ||| |||| ||||||| | ||||| | Sbjct 14613 CGCTATTATCCTTTCTCCAAAAGTAGCGTTTTGGTCAGCTATCCATCTCAATGCCCAATC 14554 Query 13351 TGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATA 13394 ||||||| || ||||| ||| |||| || ||||| |||| Sbjct 14553 TGCTTTTCTCTTCACGCAAGGCATTGTTTCGATAGCGTTGAATA 14510 >seq24804 Length=9356 Score = 98.7 bits (108), Expect = 9e-16 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 13424 TAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAA 13483 ||||| || |||||||| ||||||||||||||||| | ||| || || | ||||| || Sbjct 6683 TAAGTGTCGATCAATAAACTATACATTTCTGAATGTACATTCTCAATAGTGATTTGAAAT 6624 Query 13484 CCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTT 13543 || || ||| |||| || || | | |||||||| | || | ||| ||| ||| Sbjct 6623 CCGTAGAAAAATCTGGCTTCAGGAATTTGAACTTCTTGAAAGAAACGTTCGACTAGATTT 6564 Query 13544 TCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttt 13603 || ||||| || || ||| ||||| ||||| || | | ||| ||||||||| ||| Sbjct 6563 TCATTAACGATACCATCAGAGGCAGCGAAAAATGCTAAAACGTGTGAAATAAATTTCTTT 6504 Query 13604 tC 13605 || Sbjct 6503 TC 6502 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/227 (70%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 13173 CTTCATCTCTACTTATTAGCTCGTT--TGAAAATGTTAGACCCGGCATAAGCCCTCGTTT 13230 |||| ||||| ||| || || || ||||| || | || ||||| || ||||| || Sbjct 7001 CTTCGTCTCTTGATATCAGTTCATTACTGAAA--GTCAATCCAGGCATTAGGCCTCGCTT 6944 Query 13231 TTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAA 13290 ||| | ||||||||| || ||||| || ||||| || || ||||| || |||||||| Sbjct 6943 TTTGAGCCAAAATATTGCGGCAAAACTTCCAGAAAAGAAGATACCTTCGACAGCTGCAAA 6884 Query 13291 CGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCACTTTCTG-GCCCAGT 13349 |||||| | ||||| ||| | || |||| | | ||||| |||| | ||||| | Sbjct 6883 CGCTATGATTCTTTCTCCAAAAGTGGCGTTTTGATCAGCAATCCA-TTTCAGAGCCCAAT 6825 Query 13350 TTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAA 13396 |||||| || || || ||| |||| || ||||| |||||| Sbjct 6824 CTGCTTTCCTCTTGACACAAGGCATGGTTTCAATAGCGTTGAATAAA 6778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430631227055514