Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq38187 87.8 2e-12 seq18352 86.0 5e-12 >seq38187 Length=9425 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 48514 TAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTC 48573 |||||| |||||||||||| || ||||||||||| ||||| ||| || |||| Sbjct 3198 TAACACCAAATGAAGTGTGGATTCTTTTTGAATGTTATAATCGCTCAAGGTACGGCCGTC 3139 Query 48574 CTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTC 48633 | || || |||||| || | ||||| || || |||||| || | || ||| || || Sbjct 3138 TTTCAATTGTTTACCGGCGAAGATTAATCGTTGTTGATCCGGTGGGATACCTTCTTTATC 3079 Query 48634 CATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 | ||||| ||||| | || |||||| | ||| | | ||| || || Sbjct 3078 CTGTATTTTAGCCTTGACGTTTTCAATAGTATCGCATGGCTCGACTTTCAATGTGATTGT 3019 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||||||| || ||||| || ||||| ||||| Sbjct 3018 TTTACCGGTTAGCGTTTTAACGAAAATTTGCAT 2986 >seq18352 Length=35742 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| || || | | || ||||| || || || ||||||||||||||||| | | Sbjct 19989 CCTCCACGTAAACGAAGTACCAAATGTAGGGTTGATTCTTTTTGAATGTTGTAATCCGAC 19930 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 ||| ||| |||| || || || |||||| || |||| | ||| ||||| ||| || Sbjct 19929 AATGTTCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGCTGGTCCGGAGGG 19870 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | || || || || ||||| ||||| | ||||| || | | ||| Sbjct 19869 ATACCCTCTTTATCTTGGATTTTGGCCTTGACGTTTTCGATGGTGTCACTGGGCTCAACT 19810 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||| || |||||||| ||||| | |||||| || ||||| ||||| Sbjct 19809 TCGAGGGTGATGGTTTTGCCGGTTAAAGTTTTAACGAAAATTTGCAT 19763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420907956228857