Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq39894 167 2e-36 seq2470 154 1e-32 seq38187 125 6e-24 seq18352 123 2e-23 >seq39894 Length=23042 Score = 167 bits (184), Expect = 2e-36 Identities = 188/249 (76%), Gaps = 6/249 (2%) Strand=Plus/Plus Query 94763 TTTTTA--AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCT 94820 |||||| ||| ||| || ||| || | | || || ||||| || | ||||||||||| Sbjct 12452 TTTTTACGAAAATTTGCATTCCACCGCGAAGACGTAAGACCAAATGAAGAGTAGATTCCT 12511 Query 94821 TTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGAT 94878 |||| | ||||||||||| || ||| || || |||| ||||||||| ||||||| Sbjct 12512 TTTGAATATTATAATCGCT--GAGAGTTCGACCGTCTTCCAATTGTTTTCCGGCAAAGAT 12569 Query 94879 TAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCC 94938 |||| ||| ||||| || ||||| ||||||||||| | ||||||||| || ||| | Sbjct 12570 CAATCGTTGTTGATCAGGTGGAATGCCTTCTTTGTCCTGAATTTTTGCTTTTACGTTTTC 12629 Query 94939 GACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAA 94998 || || || | | ||||| || | ||||||||||||||||| || ||||| ||||| Sbjct 12630 GATCGTATCGGACGGTTCGACTTCCAAAGTGATGGTTTTTCCAGTGAGCGTTTTTACAAA 12689 Query 94999 GATCTGCAT 95007 |||||||| Sbjct 12690 AATCTGCAT 12698 Score = 163 bits (180), Expect = 3e-35 Identities = 185/247 (75%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 94763 TTTTTA--AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCT 94820 |||||| ||| ||| || ||| || | | || || ||||| || | ||||||||||| Sbjct 11996 TTTTTACGAAAATTTGCATTCCACCGCGAAGACGTAAGACCAAATGAAGAGTAGATTCCT 12055 Query 94821 TTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTA 94880 |||| | ||||||||||| | ||| | ||| || | |||||||||| | ||||| | Sbjct 12056 TTTGAATATTATAATCGCTGAGAGTACGGCCATCTTCTAACTGTTTTCCGGCGAAGATCA 12115 Query 94881 ATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGA 94940 ||||||||||||| || ||||| ||||||||||| | ||||||||| || ||| ||| Sbjct 12116 ATCTTTGCTGATCAGGTGGAATGCCTTCTTTGTCCTGAATTTTTGCTTTAACGTTTTCGA 12175 Query 94941 CAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGA 95000 || || | | ||||| || | |||||||| || || || |||||||| || |||| Sbjct 12176 TCGTATCGGACGGCTCGACTTCCAAAGTGATGGTCTTGCCGGTGAGAGTTTTAACGAAGA 12235 Query 95001 TCTGCAT 95007 | ||||| Sbjct 12236 TTTGCAT 12242 Score = 118 bits (130), Expect = 9e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 || ||||||||||| | || || || || || | |||||||| |||| || | Sbjct 11572 CGTAACACCAAGTGAAGTGTGGACTCTTTCTGAATATTATAATCACTCAAGGTACGGCCG 11631 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| ||||| ||| | |||||||||| |||||| || || || || |||||||| Sbjct 11632 TCTTCCAATTGTTTACCGGCGAAGATTAATCGTTGCTGGTCGGGTGGGATGCCTTCTTTA 11691 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| || || ||| ||| || || | | ||||| || | |||||| Sbjct 11692 TCTTGTATTTTCGCTTTTACGTTTTCGATCGTATCCGACGGTTCGACTTCCAAAGTGATG 11751 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||| || |||||||| || || |||||||| Sbjct 11752 GTTTTTCCGGTGAGAGTTTTTACGAAAATCTGCAT 11786 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || ||||||||||| | ||||| ||||||| || | ||| |||| ||||| ||| Sbjct 12730 GTTGATTCCTTTTGAATATTATAGTCGCTCAACGTACGGCCATCTTCCAATTGTTTGCCG 12789 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | || ||||||||||| || || || || |||||||| || || | ||||| || || Sbjct 12790 GCGAAAATTAATCTTTGTTGGTCCGGTGGGATACCTTCCTTATCCTGGATTTTAGCTTTC 12849 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| ||| ||||| | | ||||| || | |||||||| || || || |||||| Sbjct 12850 ACGTTCTCGATCGTGTCGGACGGCTCGACCTCCAAAGTGATGGTCTTGCCGGTGAGAGTT 12909 Query 94991 TTCACAAAGATCTGCAT 95007 || || ||||||||||| Sbjct 12910 TTAACGAAGATCTGCAT 12926 Score = 102 bits (112), Expect = 7e-17 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTC 94868 || ||||||||||| | ||||| ||||| ||||| || |||||| |||||||| | Sbjct 12274 GTTGATTCCTTTTGGATATTATAGTCGCT--GAGTGTACGACCATCCTCAAGCTGTTTAC 12331 Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928 || | || || |||| ||| || || || || |||||||| || || | |||||| || | Sbjct 12332 CGGCGAAAATCAATCGTTGTTGGTCGGGTGGGATACCTTCCTTATCTTGAATTTTGGCTT 12391 Query 94929 TGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAG 94988 | ||| | | ||||| | | ||||| || | ||| || |||||||| || | | Sbjct 12392 TCACGTTCTCAATCGTGTCGGATGGTTCGACTTCTAACGTAATCGTTTTTCCTGTCAATG 12451 Query 94989 TTTTCACAAAGATCTGCAT 95007 |||| || || || ||||| Sbjct 12452 TTTTTACGAAAATTTGCAT 12470 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || ||||||||||| | ||||| ||||||| || | ||| |||| ||||| ||| Sbjct 11818 GTTGATTCCTTTTGGATATTATAGTCGCTCAATGTACGGCCATCTTCCAATTGTTTGCCG 11877 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | || ||||||||||| || || || || |||||||| || || | |||||| || || Sbjct 11878 GCGAAAATTAATCTTTGTTGGTCCGGTGGGATACCTTCCTTATCTTGAATTTTGGCTTTC 11937 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || | | ||||| | | || || || | ||| || |||||||| || || ||| Sbjct 11938 ACATTTTCAATCGTGTCGGATGGTTCTACTTCCAACGTAATAGTTTTTCCTGTGAGCGTT 11997 Query 94991 TTCACAAAGATCTGCAT 95007 || || || || ||||| Sbjct 11998 TTTACGAAAATTTGCAT 12014 >seq2470 Length=523 Score = 154 bits (170), Expect = 1e-32 Identities = 183/247 (74%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 94763 TTTTTA--AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCT 94820 |||||| ||| ||| || ||| || | | || || ||||| || | ||| ||||| | Sbjct 215 TTTTTACGAAAATTTGCATTCCACCGCGAAGACGTAAGACCAAATGAAGAGTCGATTCTT 274 Query 94821 TTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTA 94880 |||| | ||||||||||| | ||| | ||| || | |||||||||| | ||||| | Sbjct 275 TTTGAATATTATAATCGCTGAGAGTACGGCCATCTTCTAACTGTTTTCCGGCGAAGATCA 334 Query 94881 ATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGA 94940 ||||||||||||| || ||||| ||||||||||| | ||||||||| || ||| ||| Sbjct 335 ATCTTTGCTGATCAGGTGGAATGCCTTCTTTGTCCTGAATTTTTGCTTTAACGTTTTCGA 394 Query 94941 CAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGA 95000 || || | | ||||| || | |||||||| || || || |||||||| || |||| Sbjct 395 TCGTATCGGACGGCTCGACTTCCAAAGTGATGGTCTTGCCGGTGAGAGTTTTAACGAAGA 454 Query 95001 TCTGCAT 95007 | ||||| Sbjct 455 TTTGCAT 461 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || ||||||||||| | ||||| ||||||| || | ||| |||| ||||| ||| Sbjct 37 GTTGATTCCTTTTGGATATTATAGTCGCTCAATGTACGGCCATCTTCCAATTGTTTGCCG 96 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | || ||||||||||| || || || || |||||||| || || | |||||| || || Sbjct 97 GCGAAAATTAATCTTTGTTGGTCCGGTGGGATACCTTCCTTATCTTGAATTTTGGCTTTC 156 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || | | ||||| | | || || || | || || |||||||| || || ||| Sbjct 157 ACATTTTCAATCGTGTCGGATGGTTCCACTTCCAATGTAATAGTTTTTCCGGTGAGCGTT 216 Query 94991 TTCACAAAGATCTGCAT 95007 || || || || ||||| Sbjct 217 TTTACGAAAATTTGCAT 233 >seq38187 Length=9425 Score = 125 bits (138), Expect = 6e-24 Identities = 161/217 (74%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 || |||||||| || | || ||||| ||||| | |||||||||||||| || | Sbjct 3200 CGTAACACCAAATGAAGTGTGGATTCTTTTTGAATGTTATAATCGCTCAAGGTACGGCCG 3141 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || | || ||||| ||| | |||||||||| ||| ||||| || || ||||||||||| Sbjct 3140 TCTTTCAATTGTTTACCGGCGAAGATTAATCGTTGTTGATCCGGTGGGATACCTTCTTTA 3081 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGAC-GTCAATCGTGA 94970 || | ||||| ||||||||| | | ||| || || ||| ||||| ||||| |||| Sbjct 3080 TCCTGTATTTTAGCCTTGACGTTTTCAATAGTATC-GCATGGCTCGACTTTCAAT-GTGA 3023 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| || || || ||||| || || || ||||| Sbjct 3022 TTGTTTTACCGGTTAGCGTTTTAACGAAAATTTGCAT 2986 >seq18352 Length=35742 Score = 123 bits (136), Expect = 2e-23 Identities = 173/241 (72%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| | | || |||||||||||| || | ||||| || | |||||||||||||| | | Sbjct 20229 AAAATCTGCATTCCTCCTCTCAAACGAAGAACCAAATGGAGCGTAGATTCCTTTTGGATG 20170 Query 94829 TTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || || || | || ||| | || || |||||||||||| | || ||||| | || Sbjct 20169 TTGTAGTCAG--AAAGGGTTCTACCGTCTTCGAGCTGTTTTCCGGCGAAAATTAAACGTT 20112 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 |||| || ||||| || |||||||| || | ||||| |||||||| ||| |||| Sbjct 20111 GCTGGTCCGGAGGTATGCCTTCTTTATCTTGGATTTTGGCCTTGACATTTTCGATGGTGT 20052 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 || | | || || || | || || ||||| ||||| | |||||| || || || |||| Sbjct 20051 CACTGGGCTCTACTTCCAGGGTAATCGTTTTGCCAGTTAAAGTTTTTACGAAAATTTGCA 19992 Query 95007 T 95007 | Sbjct 19991 T 19991 Score = 120 bits (132), Expect = 3e-22 Identities = 170/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || |||||||| | || | |||||||| | ||| ||||| ||||| | | Sbjct 19545 AAAATTTGCATACCTCCTCTGAGACGGAGGACCAAGTGGAGAGTGGATTCTTTTTGAATG 19486 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 ||||| || | ||| | ||| || || ||||| ||| | || || | | |||| Sbjct 19485 TTATAGTCCGAAAGTGTGCGGCCATCTTCGAGTTGTTTGCCGGCGAAAATGAGACGTTGC 19426 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || || || ||||| || |||||||| | ||||||||||||||| | | |||||| Sbjct 19425 TGGTCGGGGGGAATTCCCTCTTTGTCTTGAATTTTTGCCTTGACATTTTCTATAGTGTCG 19366 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | ||||| || | |||||| ||||| ||||| | || ||||| || || ||||| Sbjct 19365 CTGGGTTCGACTTCGAGCGTGATCGTTTTGCCAGTCAAGGTCTTCACGAAAATTTGCAT 19307 Score = 118 bits (130), Expect = 9e-22 Identities = 174/242 (72%), Gaps = 6/242 (2%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || ||||||| ||||| | ||||| || || || || || ||||| | | Sbjct 19317 AAAATTTGCATACCTCCTCGTAATCGGAGAACCAAATGTAAGGTCGACTCTTTTTGAATG 19258 Query 94829 TTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || || || | |||| ||| | || || || || |||||| | || || || | || Sbjct 19257 TTGTAGTC--TGATAGGGTTCTACCGTCTTCGAGTTGCTTTCCGGCGAAAATCAAACGTT 19200 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 |||||||||| || ||||||||||| || | |||||| || || ||| | | |||| Sbjct 19199 GCTGATCTGGCGGTATACCTTCTTTATCCTGAATTTTCGCTTTAACGTTTTCAATGGTGT 19140 Query 94947 CAGCGTGG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 | || ||| || || || | ||||| ||||| ||||| | ||||| || ||||||||| Sbjct 19139 C-GCTTGGTTCAACCTCGAGGGTGATCGTTTTCCCAGTCAACGTTTTTACGAAGATCTGC 19081 Query 95006 AT 95007 || Sbjct 19080 AT 19079 Score = 105 bits (116), Expect = 6e-18 Identities = 172/247 (70%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 94763 TTTTTA--AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCT 94820 |||||| ||| ||| || |||||| | || || | ||||| || | || ||||| | Sbjct 20009 TTTTTACGAAAATTTGCATTCCTCCACGTAAACGAAGTACCAAATGTAGGGTTGATTCTT 19950 Query 94821 TTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTA 94880 |||| | ||| ||||| || || | || || || ||||| ||| | || || | Sbjct 19949 TTTGAATGTTGTAATCCGACAATGTTCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATGA 19890 Query 94881 ATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGA 94940 | |||||| || ||||| ||||| ||||| || | ||||| ||||||||| ||| Sbjct 19889 GACGTTGCTGGTCCGGAGGGATACCCTCTTTATCTTGGATTTTGGCCTTGACGTTTTCGA 19830 Query 94941 CAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGA 95000 |||||| | | || || || | ||||||||||| || || | |||||| || || | Sbjct 19829 TGGTGTCACTGGGCTCAACTTCGAGGGTGATGGTTTTGCCGGTTAAAGTTTTAACGAAAA 19770 Query 95001 TCTGCAT 95007 | ||||| Sbjct 19769 TTTGCAT 19763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447916557440520