Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq18013 192 9e-45 seq27469 176 7e-40 seq11303 170 3e-38 seq56243 161 2e-35 seq63802 159 5e-35 seq2237 159 5e-35 seq966 158 2e-34 >seq18013 Length=37311 Score = 192 bits (212), Expect = 9e-45 Identities = 204/269 (76%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || |||||||| | | ||||| |||||||||||||| ||||| || || ||||| Sbjct 7781 CGCCAAACGTCATCGTAAAGTACTTCGTGATAACATCCAAGGTATCACGAAACCGGCTAT 7722 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||| |||| | |||||||| ||||| ||| |||| |||||| |||| ||||| | Sbjct 7721 CCGTCGTTTGGCCAGACGTGGTGGTGTCAAACGTATCTCCGGATTGATCTACGAAGAAAC 7662 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | ||| | | | ||| |||| ||||||| || ||| ||||| Sbjct 7661 CCGAGGTGTCTTGAAAGTTTTCTTGGAAAACGTCATCCGTGATGCTGTCACCTACACCGA 7602 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | || || ||||| | |||||| | |||||||| |||||||||||||| Sbjct 7601 ACACGCCAAGAGGAAAACCGTCACTGCTATGGATGTAGTCTATGCCTTGAAACGTCAAGG 7542 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | | || ||||| ||| |||||| Sbjct 7541 AAGAACCTTGTACGGTTTCGGAGGTTAAT 7513 >seq27469 Length=38624 Score = 176 bits (194), Expect = 7e-40 Identities = 204/274 (74%), Gaps = 1/274 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || |||||||| | | | || |||||||||||||| ||||| || |||||||| Sbjct 37086 CGCCAAACGTCATCGTAAAGTGTTACGTGATAACATCCAAGGTATCACGAAACCAGCTAT 37027 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| | || | |||||||| ||||| ||| || || ||| |||| ||||| | Sbjct 37026 TCGTCGTTTAGCCAGACGTGGTGGTGTCAAACGTATCAGCGGTTTGATCTACGAAGAAAC 36967 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| ||||| |||| | | | |||||| | ||||||| || || ||||| Sbjct 36966 TCGCGGTGTCTTGAAAGTCTTTTTGGAAAACGTTATTCGTGATGCTGTCACTTACACCGA 36907 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| ||| | || || ||||| | |||||| |||| || || |||||||||||||| Sbjct 36906 ACACGCCAAAAGGAAAACCGTCACGGCTATGGATGTCGTATACGCTTTGAAACGTCAAGG 36847 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 | | | | || ||||||||| |||||| |||| Sbjct 36846 CAGAACCTTGTACGGTTTTGGAGGTTAAT-TTCT 36814 >seq11303 Length=3443 Score = 170 bits (188), Expect = 3e-38 Identities = 199/269 (74%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || |||||||| | | | | || |||||||||||||| ||||| || || || || Sbjct 2371 CGCCAAACGTCATCGTAAAGTTTTACGTGATAACATCCAAGGTATCACGAAACCTGCAAT 2430 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||| | || | |||||||| ||||||||| | ||||||||| | || ||||| | Sbjct 2431 CCGTCGTTTAGCCAGACGTGGTGGTGTCAAGCGTATTTCTGGATTGATTTACGAAGAAAC 2490 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| ||||| | ||| | | | || |||| |||||| | || || || Sbjct 2491 TCGTGGTGTCCTGAAGGTATTCTTGGAAAATGTCATCCGTGATGCAGTTACTTACACTGA 2550 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | || || ||||| |||||||| |||| ||||| ||||||||||||| Sbjct 2551 ACACGCCAAGAGGAAAACCGTCACTGCCATGGATGTCGTATATGCCCTGAAACGTCAAGG 2610 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | | || ||||||||| |||||| Sbjct 2611 AAGAACTTTGTACGGTTTTGGAGGTTAAT 2639 >seq56243 Length=43340 Score = 161 bits (178), Expect = 2e-35 Identities = 197/269 (73%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || |||||||| | | | | || |||||||||||||| ||||| || || || || Sbjct 40052 CGCCAAACGTCATCGTAAAGTTTTACGTGATAACATCCAAGGTATCACGAAACCTGCAAT 39993 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||| | || | |||||||| ||||| ||| | ||||| ||| | || ||||| | Sbjct 39992 CCGTCGTTTAGCCAGACGTGGTGGTGTCAAACGTATTTCTGGTTTGATTTACGAAGAAAC 39933 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| ||||| | || | | | ||| || | ||||||| | ||| || || Sbjct 39932 CCGTGGTGTCTTGAAAGTGTTTTTGGAAAACGTCATTCGTGATGCTGTTACCTACACTGA 39873 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | || ||||| ||| | |||||| | |||||||| |||||||||||||| Sbjct 39872 ACACGCCAAGAGGAAAACTGTTACCGCTATGGATGTTGTCTATGCTTTGAAACGTCAAGG 39813 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | | || ||||| ||| |||||| Sbjct 39812 TAGAACTTTGTACGGTTTCGGAGGTTAAT 39784 >seq63802 Length=65985 Score = 159 bits (176), Expect = 5e-35 Identities = 196/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || |||||||| | | | | || ||||| ||||||||||| ||||| ||||| || Sbjct 62786 CGCCAAACGTCATCGTAAAGTTTTACGTGATAATATCCAAGGAATAACCAAACCAGCCAT 62727 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| ||||| | |||||||| || || ||| |||||||| || |||||||||| | Sbjct 62726 TCGTCGTTTGGCTAGACGTGGTGGTGTGAAACGTATCTCTGGACTGATCTATGAAGAAAC 62667 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| || || | ||| | | | ||| ||| ||||| || || ||||| Sbjct 62666 CCGAGGTGTCTTAAAAGTTTTCTTGGAAAACGTAATCAGAGATGCCGTCACATACACCGA 62607 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || ||| | || ||||| || | ||||| |||| ||||| ||||||||||||| Sbjct 62606 GCATGCCAAAAGGAAAACTGTTACGGCTATGGACGTCGTGTATGCCCTGAAACGTCAAGG 62547 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | || ||||| ||| ||||| Sbjct 62546 AAGAACTTTGTACGGTTTCGGAGGTTAA 62519 >seq2237 Length=11487 Score = 159 bits (176), Expect = 5e-35 Identities = 196/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || ||||| || | | ||| || |||||||| ||||||||||| || ||||| || Sbjct 6619 CGCCAAACGTCACCGAAAAGTTCTCCGTGATAACATTCAAGGAATCACGAAACCAGCCAT 6560 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| ||||| | ||||| || || || ||| |||| |||||| |||| ||||| | Sbjct 6559 TCGTCGTTTGGCTAGACGTGGAGGTGTTAAACGTATCTCCGGATTGATCTACGAAGAAAC 6500 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| ||||| | ||| | | | || || | ||| || || || ||||| Sbjct 6499 TCGTGGTGTGTTGAAAGTGTTCTTGGAAAATGTCATTCGTGACGCAGTCACTTACACCGA 6440 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| | || || || || | ||||| | || ||||| |||||||||||||| Sbjct 6439 ACACGCTAAAAGGAAAACCGTTACTGCGATGGACGTTGTGTATGCGTTGAAACGTCAAGG 6380 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | || ||||| ||| ||||| Sbjct 6379 AAGGACTTTGTACGGTTTCGGAGGTTAA 6352 >seq966 Length=1427 Score = 158 bits (174), Expect = 2e-34 Identities = 200/275 (73%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || |||||||| | | | | || |||||||||||||| ||||| || || || || Sbjct 887 CGCCAAACGTCATCGTAAAGTTTTACGTGATAACATCCAAGGTATCACGAAACCTGCAAT 828 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| | || | |||||||| ||||| ||| | ||||| ||| | |||||||| | Sbjct 827 CCGCCGTTTAGCCAGACGTGGTGGTGTCAAACGTATTTCTGGTTTGATTTATGAAGAAAC 768 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| |||| | || | | | || |||| ||||||| || ||||| || Sbjct 767 TCGCGGTGTCCTGAAAGTATTTTTGGAAAATGTCATCCGTGATGCTGTCACTTATACTGA 708 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | || || |||||| | |||||| | || ||||| ||||||||||||| Sbjct 707 ACACGCCAAGAGGAAAACGGTCACCGCTATGGATGTTGTATATGCCCTGAAACGTCAAGG 648 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCTA 16706 | | | |||||||||||| | |||| |||| Sbjct 647 AAGAACTCTGTATGGTTTTGGAGGCTAATTATCTA 613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79014072176901