Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq3736 152 1e-32 seq25017 80.6 5e-11 >seq3736 Length=11343 Score = 152 bits (168), Expect = 1e-32 Identities = 395/596 (66%), Gaps = 26/596 (4%) Strand=Plus/Plus Query 4141 TGTGCTAATAGACATGCTGAAGCTAACAACCGGTATATGGGCAAAGATTTTGATTCAAAC 4200 ||| | |||||| |||| ||||||| || || ||||| || || |||||| |||| Sbjct 1713 TGTTCAAATAGATATGCAAAAGCTAATAATAAATACATGGGAAAGGAATTTGATAAAAAC 1772 Query 4201 AACCCCGAAACATACCTGATGTACTAT---GATGTAAATAATTTGTATGGCGCAGCGATG 4257 || || | | || | ||| |||| ||||||||| ||||| || ||| Sbjct 1773 AAG---GATTCTGTATTTATTCAATATTTAGATGCAAATAATTTATATGGATGGGCTATG 1829 Query 4258 AGTATGTCTTTACCAAAGGGTAAATTTGAATGGGTTGAAAATGTAGA------TGATGTA 4311 ||| || |||||| | || ||||||||||| |||| ||| | ||| | Sbjct 1830 TGTAAGTATTTACCTTATGGAGGATTTGAATGGGG---AAATCCAGAATATTTTAATGAA 1886 Query 4312 GATC-AGTTTT-----TCAATGATGATGAGAGTGTAGGCTACATCCTTGAAGTAGATCTA 4365 || | || | | || |||||| ||| | || || | ||||||| ||| || Sbjct 1887 GAAAGAATTCTAAAAATGAAAGATGATCAGAAAATTGGATATCTTTTTGAAGTGGATTTA 1946 Query 4366 CACTATCCTGAGAATTTACATGATCTACACAAAGATCTACCTTTATGCCCAGAACATTTT 4425 | ||||| || | ||||||||| ||| ||| |||||| || || ||| || Sbjct 1947 AAATATCCCGAAGAATTACATGATAAACATTCTGATTTACCTTATTGTCCTGAAAAT--- 2003 Query 4426 GTACCACCTGGTAGCAAGCAACAAAAACTCACGACAACTCTGTACGATAAAAATAATTAT 4485 ||| || || | | | | |||| | ||||| | || |||||||| || || Sbjct 2004 GTAATTGATGATAACCAACTTCCAAAATTATTTACAACATTATATGATAAAAAGAAATAC 2063 Query 4486 GTTATTCACTATAAAAATTTGAAACAATGT-TTAGATTTAGGTTTAGTTCTTAAGAAAAT 4544 ||| |||| ||| |||| | |||||| | ||| | | |||| || | ||||| | Sbjct 2064 GTTCTTCATTATTTAAATCTTAAACAAGCTCTTAAAGCTGGGTT-AGAATTAGAGAAAGT 2122 Query 4545 ACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATATATCGATAAAAATAC 4604 || ||| | |||||||| || ||||||||| | || | |||||| || |||||||| Sbjct 2123 TCATAGAGTTATAAAATTTGATCAGTCAGACTGGATGAAGTTATATATTGAAAAAAATAC 2182 Query 4605 CGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAA 4664 | || || |||||||||||| || |||||| | || | ||| |||||||||| Sbjct 2183 AAAACTGAGACAAGAAGCTAAGAATGATTTTGAAAAAGATTTCTTTAAGCTAATGAATAA 2242 Query 4665 TGCGGTTTTTGGAAAGACGATGGAGAATGTACGAAAATATAAAGATATATATTTAA 4720 | | |||||||||| || ||| |||||| |||| || ||||||| | |||| Sbjct 2243 TTCTGTTTTTGGAAGAACAATGATGAATGTTAGAAAGCATGTAGATATAAAATTAA 2298 >seq25017 Length=5109 Score = 80.6 bits (88), Expect = 5e-11 Identities = 101/138 (73%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 3370 AAAGTTTATGATCATTGTCACTTTACGGGTAACTACAGAGATGCTGCACATAAATCCTGT 3429 |||||| ||||||| ||| || || || | || |||| |||||| |||| ||| Sbjct 4009 AAAGTTCGTGATCATGATCATTTGACAGGAGAATATAGAGGTGCTGCGCATAGTGTTTGT 3950 Query 3430 AACGTTAATTATCAAAAATCTACCATTATCCCAGTTGTCTTTCATAATTTATCCGGCTAT 3489 || | ||||| || | ||| ||||||||||| |||| ||||||||||| || ||| Sbjct 3949 AATTTACATTATAAAGTACCTAAATTTATCCCAGTTTTCTTACATAATTTATCAGGTTAT 3890 Query 3490 GATTCCCACTTCATAATT 3507 ||| |||| ||||||| Sbjct 3889 GATGCCCA---CATAATT 3875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97896615490778