Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq47140 95.1 1e-14 seq24804 87.8 2e-12 >seq47140 Length=38879 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/224 (70%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 21498 CTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTT 21557 |||| || || ||||||||||||| || || || || ||||| | |||||||| | Sbjct 14731 CTTCGTCTCTCGATATTAATTCATTACTGAAAGTCAATCCAGGCATAAGACCTCTCTTCT 14672 Query 21558 TTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATG 21617 | | ||||||||| | |||||| ||| |||||||| || || || || || ||||| | Sbjct 14671 TGAGCCAAAATATCGCCGCAAAACTTCCCGAAAAGAAGATTCCTTCGACAGCTGCAAACG 14612 Query 21618 CAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTG 21677 | | || | ||| || | |||| | || || ||||||| | |||||| | || Sbjct 14611 CTATTATCCTTTCTCCAAAAGTAGCGTTTTGGTCAGCTATCCATCTCAATGCCCAATCTG 14552 Query 21678 CCTTTTCT-TTAATACAATCAATTGTATCAATAGCTTTTAAAAG 21720 ||||||| || | ||| ||||| || ||||| || || || Sbjct 14551 -CTTTTCTCTTCACGCAAGGCATTGTTTCGATAGCGTTGAATAG 14509 >seq24804 Length=9356 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825 |||||||||||| ||||||| ||| || || | || ||||||||||| ||| |||| || Sbjct 6666 ACTATACATTTCTGAATGTACATTCTCAATAGTGATTTGAAATCCGTAGAAAAATCTGGC 6607 Query 21826 CTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885 || | | |||||| || | | || |||| | | |||||||| || || ||||| Sbjct 6606 TTCAGGAATTTGAACTTCTTGAAAGAAACGTTCGACTAGATTTTCATTAACGATACCATC 6547 Query 21886 ACTGGCGGCAAAAAATGCCAA 21906 | ||| || |||||||| || Sbjct 6546 AGAGGCAGCGAAAAATGCTAA 6526 Score = 86.0 bits (94), Expect = 7e-12 Identities = 153/221 (69%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 21498 CTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTT 21557 |||| || || ||| | ||||||| || || || || ||||||| |||| ||||| Sbjct 7001 CTTCGTCTCTTGATATCAGTTCATTACTGAAAGTCAATCCAGGCATTAGGCCTCGCTTTT 6942 Query 21558 TTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATG 21617 | | ||||||||||| ||||| ||| |||||||| || || || || || ||||| | Sbjct 6941 TGAGCCAAAATATTGCGGCAAAACTTCCAGAAAAGAAGATACCTTCGACAGCTGCAAACG 6882 Query 21618 CAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTG 21677 | | | || ||| || | || | | || ||| |||||||| ||||| | || Sbjct 6881 CTATGATTCTTTCTCCAAAAGTGGCGTTTTGATCAGCAATCCATTTCAGAGCCCAATCTG 6822 Query 21678 CCTTTTCT-TTAATACAATCAATTGTATCAATAGCTTTTAA 21717 |||| || || | |||| || || |||||||| || || Sbjct 6821 -CTTTCCTCTTGACACAAGGCATGGTTTCAATAGCGTTGAA 6782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531456283852680