Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq24804 150 2e-31 seq47140 147 3e-30 seq28943 122 1e-22 seq7785 114 2e-20 >seq24804 Length=9356 Score = 150 bits (166), Expect = 2e-31 Identities = 173/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 33556 TCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTT 33615 ||| || ||| ||||| ||||| |||||||| | |||||||||||| ||||| | || Sbjct 6701 TCAGTAGGATCCTTAACGTAAGTGTCGATCAATAAACTATACATTTCTGAATGTACATTC 6642 Query 33616 TCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAA 33675 ||||| | || ||||||||||||||| |||| || || | ||| || |||||| | | Sbjct 6641 TCAATAGTGATTTGAAATCCGTAGAAAAATCTGGCTTCAGGAATTTGAACTTCTTGAAAG 6582 Query 33676 AATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 33735 || ||||| | | ||||||||| || || || ||| ||| || ||||| || || || Sbjct 6581 AAACGTTCGACTAGATTTTCATTAACGATACCATCAGAGGCAGCGAAAAATGCTAAAACG 6522 Query 33736 TGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 33788 ||| ||||| | ||||| || ||| | ||||| | |||||| ||| ||| Sbjct 6521 TGTGAAATAAATTTCTTTTCTTCGGGTTTAAGTTTCTCCCAATCTCTGAAATC 6469 Score = 140 bits (154), Expect = 4e-28 Identities = 167/226 (74%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 |||||||| || ||||| || || || | ||| ||||||||||| |||||||| Sbjct 6999 TCGTCTCTTGATATCAGTTCATTACTGAAAGTCAATCCAGGCATTAGGCCTCGCTTTTTG 6940 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33447 ||||||||||| | || || ||||||||||||||| ||||| || || ||||| || Sbjct 6939 AGCCAAAATATTGCGGCAAAACTTCCAGAAAAGAAGATACCTTCGACAGCTGCAAACGCT 6880 Query 33448 ATAAGTCTCTCTCCATAACCGGCGCT---GTCATGTATCCACTTTTGAGCCCAATCGGCC 33504 || | ||| |||||| || |||| | ||| ||||| || |||||||||| || Sbjct 6879 ATGATTCTTTCTCCAAAAGTGGCGTTTTGATCAGCAATCCATTTCAGAGCCCAATCTGCT 6820 Query 33505 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 33550 ||| | || ||||||||||| ||||| || || || || | | ||| Sbjct 6819 TTCCTCTTGACACAAGGCATGGTTTCAATAGCGTTGAATAAAAAGT 6774 Score = 104 bits (114), Expect = 3e-17 Identities = 143/199 (72%), Gaps = 6/199 (3%) Strand=Plus/Minus Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 33192 ||||| || || |||||||| ||||| || ||||| | ||||| ||||||||| || | Sbjct 7263 AATCTGTCGGCCACGAATTCAATATAGGTCTTCATTAATTCACTATTCATTCCGATCATC 7204 Query 33193 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 33252 ||||| | ||| | || | ||||||||||||||| || || || ||||| Sbjct 7203 GATACTGGTAAAGCGTCGGTTAAAAATTCTTGTTCAATTATGACAGCGTCGCGAATAATT 7144 Query 33253 GATCTAACGGTTTCTT---CACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCG 33309 ||| |||||| |||| ||| || | ||||||||| |||||||||||||| Sbjct 7143 TCGGTAA---TTTCTTCAACACTGGGTTTTTGAACTAAATGTTTGAACATCAAACATGCA 7087 Query 33310 AAATCGCAGTGCAGACCCT 33328 |||||| |||| ||||| Sbjct 7086 AAATCGGTATGCAAACCCT 7068 >seq47140 Length=38879 Score = 147 bits (162), Expect = 3e-30 Identities = 167/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 33565 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33624 ||||| || |||||||||||||| | || |||||||||||||| | |||||||| | Sbjct 14418 TCTTTTACGTAAGTATCGATCAATAAGCTGTACATTTCCGAATGTACATTTTCAATAGTG 14359 Query 33625 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCC 33684 || |||||||||||||| ||| || || | ||| ||||| ||| | | || ||||| Sbjct 14358 ATTTGAAATCCGTAGAAGAATCGGGCTTCAGGAATTTGTACCTCTTGAAAGAAACGTTCG 14299 Query 33685 GCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 33744 | ||||| ||||| || || || || ||||| |||||||||||||| || || Sbjct 14298 ACTAAATTCTCATTAACGATACCATCGGACGCTGCGAAAAACGCCAATACGTGCGAAATG 14239 Query 33745 AAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 33788 || | ||||| |||||| | ||||| | |||||| ||| ||| Sbjct 14238 AACTTCTTTTCTTCTGGTTTCAGTTTCTCCCAATCTCTGAAATC 14195 Score = 100 bits (110), Expect = 4e-16 Identities = 155/221 (70%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 |||||||| |||| ||| || || || | ||| ||||| || || | ||| || Sbjct 14729 TCGTCTCTCGATATTAATTCATTACTGAAAGTCAATCCAGGCATAAGACCTCTCTTCTTG 14670 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33447 ||||||||||| | || || ||| ||||||||||||||||| || || ||||| || Sbjct 14669 AGCCAAAATATCGCCGCAAAACTTCCCGAAAAGAAGATTCCTTCGACAGCTGCAAACGCT 14610 Query 33448 ATAAGTCTCTCTCCATAACCGGCGCT---GTCATGTATCCACTTTTGAGCCCAATCGGCC 33504 || | || |||||| || ||| | |||| |||||| | |||||||| || Sbjct 14609 ATTATCCTTTCTCCAAAAGTAGCGTTTTGGTCAGCTATCCATCTCAATGCCCAATCTGCT 14550 Query 33505 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 33545 || | || || |||||||| ||||| || || || || || Sbjct 14549 TTTCTCTTCACGCAAGGCATTGTTTCGATAGCGTTGAATAG 14509 >seq28943 Length=35018 Score = 122 bits (134), Expect = 1e-22 Identities = 128/166 (77%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 63629 GGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGA 63688 |||||||||||| ||||| || || |||| || | || ||| || || ||||| |||| Sbjct 14949 GGTAGGAGAAGCATGCGTGAAGTATCTTTCGGATAATAAATTATAGGTTTCAATCGCTGC 15008 Query 63689 GTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTT 63747 ||| ||||| || | |||||||| || || || | ||| ||||||||||| |||| || Sbjct 15009 GTCGATATCTTCACCG-TGAATTCCGACAGCAACTCTCATCAACATGTGCTGTGGTCGTT 15067 Query 63748 CAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63793 |||| | ||| |||||||||||| || || || ||||| ||||| Sbjct 15068 CAACCACCTTTCCGTTTATTTTCAATAAATACGACTTTTCTAAAGT 15113 Score = 96.9 bits (106), Expect = 4e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 62336 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62395 ||| || |||||||| || || |||| | ||| || ||||| ||||| ||||| | Sbjct 13240 TACCTGGAATTCTCCTGATAAGACTCGTCTAGTATACATATTCGAAGTATATGGTTCGAA 13299 Query 62396 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62455 || || |||||||| |||||||||||||| || ||||| ||||||||||| | | | Sbjct 13300 AGATTCGTTATTTCCTAAAATTTGAGCAGTGGAAGCAGTAGGCATAGGTGCGAGTAGAAG 13359 Query 62456 ACTATTTCTAAGACCGTATGTTCTGATTTTATCTTT 62491 |||||| | ||| ||| | | ||||| ||||| Sbjct 13360 TGAATTTCTGACACCATATTGTTTTATTTTTTCTTT 13395 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 62946 ATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG 63005 || || || || | |||||||| ||||| |||||||||||||| ||||| ||| Sbjct 14063 ATTTCGGTACATAAATTACTACTTTTGATGGTTCCTAAATTTTGGTGATTTGATTTTCGA 14122 Query 63006 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 63065 || || ||||| ||||| | ||| | ||||| || |||||||||||||| |||| ||| Sbjct 14123 TTGCAGGCATCTTTATATAACATGTAAGGAGTTCCTGTTTCAATCTGAGAGTCTAAAATT 14182 Query 63066 GC 63067 || Sbjct 14183 GC 14184 >seq7785 Length=64017 Score = 114 bits (126), Expect = 2e-20 Identities = 138/187 (74%), Gaps = 8/187 (4%) Strand=Plus/Plus Query 63618 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 63677 ||||||||||| ||||| ||||| || ||||| ||||| ||| | || ||| || || Sbjct 9368 GCATTAAATAAAGTAGGGGAAGCATGTGTAAAATATTTTAGAGACATTAAATTATAAGTT 9427 Query 63678 TCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACGCATTAACAT 63733 |||||| ||||| ||||| |||| |||| || || | ||| ||||||||||| Sbjct 9428 TCAATAATCGAGTCAATATCTTCACCATGGATG----CCAACAGAGACCCGCATTAACAT 9483 Query 63734 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63793 ||| || || | ||| || | || ||| |||||||| || ||||| |||||||| || Sbjct 9484 GTGTTGGGGACGTTCGACAACACGGTCGTTGATTTTCAATAAATAGGACTTTTCCAATGT 9543 Query 63794 TTTAAAA 63800 | |||| Sbjct 9544 CTGAAAA 9550 Score = 104 bits (114), Expect = 3e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 ||||||| ||||||||||| | || || | || |||||| || || ||||||| Sbjct 7320 TCCATCCATAAAAATGCATCGATGAAAGATTCGCGTACGACGGATCAGCAATGTGGATAT 7379 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 ||| | ||| ||||||||||| || || || || ||||||||||| | || |||| Sbjct 7380 TCAAACTTTGTGACTGATCGATGAACGCACCTCTATCGGCAGCCATTTTCAAAATGGTCT 7439 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAA 62211 | ||| ||||||||||| ||||||||||| Sbjct 7440 TCTGTTTAATTTCCCAAACAGTTTTATAAA 7469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622426595238120