Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq18352 158 1e-33 seq39894 141 9e-29 seq2470 123 2e-23 seq38187 89.7 5e-13 >seq18352 Length=35742 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||||||||| || ||| | ||||| ||||| | ||| ||| | Sbjct 19535 ATGCAAATTTTCGTGAAAACATTAACCGGTAAAACTATCACGCTCGAAGTCGAACCAAGC 19594 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || ||| | ||||| || ||| ||||| ||||| ||||| || || ||| Sbjct 19595 GACACTATTGAGAACGTCAAGGCCAAAATTCAGGACAAGGAAGGTATACCACCTGACCAA 19654 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | || || | || ||| |||||||||||||| | |||| | | |||||| ||| Sbjct 19655 CAACGTCTTATCTTCGCCGGTAAACAACTCGAAGACGGAAGAACCCTTTCCGACTACAAC 19714 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||||||||| ||| |||| ||||||| | || |||||||| Sbjct 19715 ATCCAAAAAGAATCCACTCTCCACTTGGTCCTCCGTCTCAGAGGAGG 19761 Score = 156 bits (172), Expect = 4e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || || ||||| ||| ||||||| ||||| | ||| | | | Sbjct 19307 ATGCAAATTTTCGTGAAGACCTTGACTGGCAAAACGATCACGCTCGAAGTCGAACCCAGC 19366 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | ||||| ||| ||| |||||||| || || || ||||| || Sbjct 19367 GACACTATAGAAAATGTCAAGGCAAAAATTCAAGACAAAGAGGGAATTCCCCCCGACCAG 19426 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG-AAACGTCAGCGACTATAA 26947 ||| | ||||||| || |||||||||||||||||||| | | || | | |||||||| Sbjct 19427 CAACGTCTCATTTTCGCCGGCAAACAACTCGAAGATGGCCGCACACTTTCG-GACTATAA 19485 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||||||||||| ||| |||| ||||||| | || |||||||| Sbjct 19486 CATTCAAAAAGAATCCACTCTCCACTTGGTCCTCCGTCTCAGAGGAGG 19533 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||||||||| | || |||||||| || ||||| ||| |||||||| |||| | ||| | Sbjct 19075 CAAAATGCAGATCTTCGTAAAAACGTTGACTGGGAAAACGATCACCCTCGAGGTTGAACC 19134 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 || ||||||||| || | || ||| || ||| || |||||||| ||||| || || Sbjct 19135 AAGCGACACCATTGAAAACGTTAAAGCGAAAATTCAGGATAAAGAAGGTATACCGCCAGA 19194 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 ||| ||| | | |||| || ||| || ||||||||||| | ||||| | | ||||| Sbjct 19195 TCAGCAACGTTTGATTTTCGCCGGAAAGCAACTCGAAGACGGTAGAACCCTATCAGACTA 19254 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||||||||| || || | ||| |||| || || | ||||||| Sbjct 19255 CAACATTCAAAAAGAGTCGACCTTACATTTGGTTCTCCGATTACGAGGAGG 19305 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | || |||||||| |||||||| ||| |||| ||| | ||| |||| | | Sbjct 19990 AATGCAAATTTTCGTAAAAACTTTAACTGGCAAAACGATTACCCTGGAAGTAGAGCCCAG 20049 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||||||||| | ||||| || || || |||||||| |||||||| || || Sbjct 20050 TGACACCATCGAAAATGTCAAGGCCAAAATCCAAGATAAAGAAGGCATACCTCCGGACCA 20109 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||| | | |||| || ||| ||||| |||||||| | ||||| | | ||||| || Sbjct 20110 GCAACGTTTAATTTTCGCCGGAAAACAGCTCGAAGACGGTAGAACCCTTTCTGACTACAA 20169 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||| ||||| |||||||| ||||| |||| || | | |||||||||| Sbjct 20170 CATCCAAAAGGAATCTACGCTCCATTTGGTTCTTCGTTTGAGAGGAGGAA 20219 Score = 129 bits (142), Expect = 6e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || ||||| || || |||||| | ||||| |||| | || | | Sbjct 20218 AATGCAGATTTTCGTGAAAACCTTGACCGGAAAAACAATCACTCTCGAGGTCGAGCCTAG 20277 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||| |||||||| | ||||| || ||| || |||||||| || ||||||||||| Sbjct 20278 CGATACCATCGAAAACGTCAAGGCTAAAATTCAAGATAAAGAAGGCATTCCTCCCGATCA 20337 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||| | || |||| || |||||||| |||||||||| |||| | || ||||| Sbjct 20338 GCAACGTCTTATTTTCGCTGGCAAACAGCTCGAAGATGGCAGAACGCTTTCGGATTATAA 20397 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAA 26998 ||| |||||||||||||| | ||| |||| || ||||| | || || || Sbjct 20398 CATCCAAAAAGAATCTACGTTACATTTGGTATTGCGACTTCGCGGTGGCAA 20448 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||| ||||| || ||| | |||||| ||||| | || | | Sbjct 19763 ATGCAAATTTTCGTTAAAACTTTAACCGGCAAAACCATCACCCTCGAAGTTGAGCCCAGT 19822 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| || || || ||||| || || ||||| || || Sbjct 19823 GACACCATCGAAAACGTCAAGGCCAAAATCCAAGATAAAGAGGGTATCCCTCCGGACCAG 19882 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | ||||||| || ||| |||||||||||||| | ||| | || || ||| Sbjct 19883 CAACGTCTCATTTTCGCCGGTAAACAACTCGAAGACGGCCGAACATTGTCGGATTACAAC 19942 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||||||||||||| || | ||| |||| || Sbjct 19943 ATTCAAAAAGAATCAACCCTACATTTGGTACT 19974 >seq39894 Length=23042 Score = 141 bits (156), Expect = 9e-29 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | || ||||||||||| || |||||| |||| || | ||| | ||| || Sbjct 12471 AATGCAAATTTTCGTAAAAACATTGACAGGAAAAACGATTACGTTAGAAGTCGAACCATC 12412 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||| || ||| | || ||| || ||| || || ||||| || || ||||| || Sbjct 12411 CGACACGATTGAGAACGTGAAAGCCAAAATTCAAGATAAGGAAGGTATCCCACCCGACCA 12352 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 |||| || | |||| || ||| ||||| || || |||| | | | ||||||||||||| Sbjct 12351 ACAACGATTGATTTTCGCCGGTAAACAGCTTGAGGATGGTCGTACACTCAGCGACTATAA 12292 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| ||||| || ||||||||||||| Sbjct 12291 TATCCAAAAGGAATCAACCCTCCATCTGGTCCT 12259 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||||||||| | ||||||||| | ||||| | ||| | ||| | | Sbjct 12698 ATGCAGATTTTTGTAAAAACGCTCACTGGAAAAACCATCACTTTGGAAGTCGAACCGTCC 12639 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || ||||| | || ||| ||| ||| ||||||||||| || || || |||||| Sbjct 12638 GATACGATCGAAAACGTAAAAGCAAAAATTCAGGACAAAGAAGGCATTCCACCTGATCAA 12579 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| || | || | | ||| |||||| | ||||| | | ||| ||||||| ||||| Sbjct 12578 CAACGATTGATCTTTGCCGGAAAACAATTGGAAGACGGTCGAACTCTCAGCGATTATAAT 12519 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 |||||||| ||||||||| | ||| ||||| | | ||| | || |||| Sbjct 12518 ATTCAAAAGGAATCTACTCTTCATTTGGTCTTACGTCTTCGCGGTGGAA 12470 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | || |||||||| | || |||||| | || || | ||| ||||| || Sbjct 12015 AATGCAAATTTTCGTAAAAACGCTCACAGGAAAAACTATTACGTTGGAAGTAGAACCATC 11956 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||| || || | || ||| || ||| || || ||||| || || || || || Sbjct 11955 CGACACGATTGAAAATGTGAAAGCCAAAATTCAAGATAAGGAAGGTATCCCACCGGACCA 11896 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||||||| | |||| || |||||||||| | ||||||| | | | ||||||||||| Sbjct 11895 ACAAAGATTAATTTTCGCCGGCAAACAATTGGAAGATGGCCGTACATTGAGCGACTATAA 11836 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| ||||| || ||||||||||||| Sbjct 11835 TATCCAAAAGGAATCAACCCTCCATCTGGTCCT 11803 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||| | || || || | ||||| | ||| | || | | Sbjct 12242 ATGCAAATCTTCGTTAAAACTCTCACCGGCAAGACCATCACTTTGGAAGTCGAGCCGTCC 12183 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || ||||| | || ||| ||| ||| ||||||||||| || || || ||||| Sbjct 12182 GATACGATCGAAAACGTTAAAGCAAAAATTCAGGACAAAGAAGGCATTCCACCTGATCAG 12123 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | || | || ||| ||||| | ||||||| | | ||||||| ||||| Sbjct 12122 CAAAGATTGATCTTCGCCGGAAAACAGTTAGAAGATGGCCGTACTCTCAGCGATTATAAT 12063 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 |||||||| ||||||||| | ||| ||||| | | ||| | || |||| Sbjct 12062 ATTCAAAAGGAATCTACTCTTCATTTGGTCTTACGTCTTCGCGGTGGAA 12014 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||| ||||| | || || ||||| | || || || | ||||| | || | || | Sbjct 12930 CAAGATGCAGATCTTCGTTAAAACTCTCACCGGCAAGACCATCACTTTGGAGGTCGAGCC 12871 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 |||||| |||||| | || ||| || || || || ||||| || || || || Sbjct 12870 GTCCGACACGATCGAGAACGTGAAAGCTAAAATCCAGGATAAGGAAGGTATCCCACCGGA 12811 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 ||||||||| | |||| || |||||||||| | ||||||| | | | |||||||| Sbjct 12810 CCAACAAAGATTAATTTTCGCCGGCAAACAATTGGAAGATGGCCGTACGTTGAGCGACTA 12751 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| |||||||| ||||| || ||||||||||||| Sbjct 12750 TAATATTCAAAAGGAATCAACCCTCCATCTGGTCCT 12715 >seq2470 Length=523 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | || |||||||| | || |||||| | || || | ||| | ||| || Sbjct 234 AATGCAAATTTTCGTAAAAACGCTCACCGGAAAAACTATTACATTGGAAGTGGAACCATC 175 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||| || || | || ||| || ||| || || ||||| || || || || || Sbjct 174 CGACACGATTGAAAATGTGAAAGCCAAAATTCAAGATAAGGAAGGTATCCCACCGGACCA 115 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||||||| | |||| || |||||||||| | ||||||| | | | ||||||||||| Sbjct 114 ACAAAGATTAATTTTCGCCGGCAAACAATTGGAAGATGGCCGTACATTGAGCGACTATAA 55 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| ||||| || ||||||||||||| Sbjct 54 TATCCAAAAGGAATCAACCCTCCATCTGGTCCT 22 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||| | || || || | ||||| | ||| | || | | Sbjct 461 ATGCAAATCTTCGTTAAAACTCTCACCGGCAAGACCATCACTTTGGAAGTCGAGCCGTCC 402 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || ||||| | || ||| ||| ||| ||||||||||| || || || ||||| Sbjct 401 GATACGATCGAAAACGTTAAAGCAAAAATTCAGGACAAAGAAGGCATTCCACCTGATCAG 342 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | || | || ||| ||||| | ||||||| | | ||||||| ||||| Sbjct 341 CAAAGATTGATCTTCGCCGGAAAACAGTTAGAAGATGGCCGTACTCTCAGCGATTATAAT 282 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 |||||||||||||| ||| | ||| ||||| | | ||| | || |||| Sbjct 281 ATTCAAAAAGAATCGACTCTTCATTTGGTCTTACGTCTTCGCGGTGGAA 233 >seq38187 Length=9425 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||| |||| || ||| | ||||| | || | || || | Sbjct 2986 ATGCAAATTTTCGTTAAAACGCTAACCGGTAAAACAATCACATTGAAAGTCGAGCCATGC 3045 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || || | ||||| || || || |||||||| || || || |||||| Sbjct 3046 GATACTATTGAAAACGTCAAGGCTAAAATACAGGATAAAGAAGGTATCCCACCGGATCAA 3105 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| || | || | || ||| |||||| | |||| | | | | | ||||| |||||| Sbjct 3106 CAACGATTAATCTTCGCCGGTAAACAATTGAAAGACGGCCGTACCTTGAGCGATTATAAC 3165 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGT 26977 |||||||||||||| || | ||| |||| Sbjct 3166 ATTCAAAAAGAATCCACACTTCATTTGGT 3194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478262375849040