Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq7785 154 4e-32 seq28943 89.7 1e-12 >seq7785 Length=64017 Score = 154 bits (170), Expect = 4e-32 Identities = 249/352 (71%), Gaps = 6/352 (2%) Strand=Plus/Plus Query 111488 AGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAAC 111547 |||||||||||| || ||||||||||| |||||| | || || || || || |||||| Sbjct 36924 AGGTGATCTCGGTCCTGTTTACGGATTCCAATGGAGACATTTCGGAGCTGAGTACAAAGA 36983 Query 111548 CATGCACGACTCATATGATTCACAGGGAACTG-ATCAATTACAGAATGTCATTGATCAAA 111606 ||||||| || || | ||| | | || ||||| |||| || ||||| ||| | Sbjct 36984 CATGCAC-ACCGATTACACGAACAAAGGAGTGGATCAACTACAAAACGTCATAGATACCA 37042 Query 111607 TTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTGG 111666 ||| ||| |||||| | | | || || || | |||| |||||||| | || Sbjct 37043 TTAGGAATAACCCAGACTGTAGACGAATAATCTTATGTGCGTGGAACCCTCTAGATTTAC 37102 Query 111667 AAAAAATGGCACTTCCACCATGTCAT--CTTATGTGCCAGTTTTATGTACACGACGGGAT 111724 |||||||| | || || |||||| |||| || | ||||||| | | |||| Sbjct 37103 CTAAAATGGCCTTACCTCCTTGTCATTGCTTA-GTAC-AGTTTTACGCAGTAAACGGTGA 37160 Query 111725 GCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATAT 111784 | |||||||||||||||||||| ||||||||||| ||| | || || || || ||||| Sbjct 37161 ATTGTCATGCCAAATGTATCAGCGTTCTGCTGATATGGGTTTAGGCGTACCATTCAATAT 37220 Query 111785 TGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAA 111836 || |||||| | | || |||| | | |||||||| | || |||| |||| Sbjct 37221 CGCTAGTTACTCCTTGCTCACTTACATGATCGCTCACGTCACCAATCACAAA 37272 >seq28943 Length=35018 Score = 89.7 bits (98), Expect = 1e-12 Identities = 118/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 364116 GAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTA 364175 |||| ||||||| || || | || || |||||||| |||||||| || || ||||| || Sbjct 14197 GAAGTTATGGTTCGCAATTTTAGACTCTCAGATTGAAACAGGAACTCCTTACATGTTATA 14138 Query 364176 CAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG-AGCA 364234 |||||| | ||||| || || || || || || | | || || || || || || | Sbjct 14137 TAAAGATGCCTGCAATCGAAAATCAAATCACCAAAATTTAGGAACCAT-CAAAAGTAGTA 14079 Query 364235 ACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAG 364275 | |||||||||| || | ||||| | |||||||||||| Sbjct 14078 ATTTATGTACCGAAATCGTCGAATATAGTGCTCCCGACGAG 14038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302237140382174