Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq18352 143 2e-29 seq39894 132 4e-26 seq2470 123 2e-23 seq38187 109 5e-19 seq37113 96.9 3e-15 seq62430 87.8 2e-12 seq24804 87.8 2e-12 >seq18352 Length=35742 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || |||||||| |||||||| ||| |||||||| | ||||| ||| ||| Sbjct 19990 AATGCAAATTTTCGTAAAAACTTTAACTGGCAAAACGATTACCCTGGAAGTAGAGCCCAG 20049 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||| | ||||| || || || ||||||||||||||||| || || Sbjct 20050 TGACACCATCGAAAATGTCAAGGCCAAAATCCAAGATAAAGAAGGCATACCTCCGGACCA 20109 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 || | | |||| || ||| || || |||||||| | |||| | | || || || Sbjct 20110 GCAACGTTTAATTTTCGCCGGAAAACAGCTCGAAGACGGTAGAACCCTTTCTGACTACAA 20169 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| ||||| |||||||| | ||||| || | | |||||||||||| Sbjct 20170 CATCCAAAAGGAATCTACGCTCCATTTGGTTCTTCGTTTGAGAGGAGGA 20218 Score = 136 bits (150), Expect = 3e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || ||||| || || |||||| | || || |||| |||||| | | Sbjct 20218 AATGCAGATTTTCGTGAAAACCTTGACCGGAAAAACAATCACTCTCGAGGTCGAGCCTAG 20277 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||| |||||||| | ||||| || ||| || ||||||||||| ||||||||||| Sbjct 20278 CGATACCATCGAAAACGTCAAGGCTAAAATTCAAGATAAAGAAGGCATTCCTCCCGATCA 20337 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 || | || |||| || ||||| || |||||||||| ||||| | |||||||| Sbjct 20338 GCAACGTCTTATTTTCGCTGGCAAACAGCTCGAAGATGGCAGAACGCTTTCGGATTATAA 20397 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||| |||||||||||||| | ||||| || || Sbjct 20398 CATCCAAAAAGAATCTACGTTACATTTGGTATT 20430 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||||||||| | || |||||||| || ||||| ||| |||| ||| |||| || || | Sbjct 19075 CAAAATGCAGATCTTCGTAAAAACGTTGACTGGGAAAACGATCACCCTCGAGGTTGAACC 19134 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | ||||||||| || | || ||| || ||| || |||||||| ||||| || || Sbjct 19135 AAGCGACACCATTGAAAACGTTAAAGCGAAAATTCAGGATAAAGAAGGTATACCGCCAGA 19194 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||| || | |||||| || ||| |||||||||||||| | |||| | | || || Sbjct 19195 TCAGCAACGTTTGATTTTCGCCGGAAAGCAACTCGAAGACGGTAGAACCCTATCAGACTA 19254 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||||||||| || || | ||||| || | |||| ||||||| Sbjct 19255 CAACATTCAAAAAGAGTCGACCTTACATTTGGTTCTCCGATTACGAGGAGG 19305 Score = 125 bits (138), Expect = 6e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || || ||||| ||| |||| || |||||||||| ||| | Sbjct 19307 ATGCAAATTTTCGTGAAGACCTTGACTGGCAAAACGATCACGCTCGAAGTCGAACCCAGC 19366 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | ||||| ||| ||| |||||||| || || || ||||| || Sbjct 19367 GACACTATAGAAAATGTCAAGGCAAAAATTCAAGACAAAGAGGGAATTCCCCCCGACCAG 19426 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAG-AAACGTCAGCGATTATAA 24169 || | || |||| || |||||| ||||||||||||| | | | || | | || ||||| Sbjct 19427 CAACGTCTCATTTTCGCCGGCAAACAACTCGAAGATGGCCGCACACTTTCG-GACTATAA 19485 Query 24170 CATTCAAAAAGAATCTAC 24187 ||||||||||||||| || Sbjct 19486 CATTCAAAAAGAATCCAC 19503 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||||||||| || ||| | || || |||||||||| | | | Sbjct 19535 ATGCAAATTTTCGTGAAAACATTAACCGGTAAAACTATCACGCTCGAAGTCGAACCAAGC 19594 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || ||| | ||||| || ||| ||||| ||||| ||||| || || ||| Sbjct 19595 GACACTATTGAGAACGTCAAGGCCAAAATTCAGGACAAGGAAGGTATACCACCTGACCAA 19654 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | || ||| || ||||||||||| | |||| | | ||| || ||| Sbjct 19655 CAACGTCTTATCTTCGCCGGTAAACAACTCGAAGACGGAAGAACCCTTTCCGACTACAAC 19714 Query 24171 ATTCAAAAAGAATCTAC 24187 || ||||||||||| || Sbjct 19715 ATCCAAAAAGAATCCAC 19731 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| ||||| || ||| | || ||| ||||||| ||| ||| Sbjct 19763 ATGCAAATTTTCGTTAAAACTTTAACCGGCAAAACCATCACCCTCGAAGTTGAGCCCAGT 19822 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| || || || ||||| || || ||||| || || Sbjct 19823 GACACCATCGAAAACGTCAAGGCCAAAATCCAAGATAAAGAGGGTATCCCTCCGGACCAG 19882 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || |||| || ||| || ||||||||||| | | ||| | ||||| ||| Sbjct 19883 CAACGTCTCATTTTCGCCGGTAAACAACTCGAAGACGGCCGAACATTGTCGGATTACAAC 19942 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||||||||||||| || | ||||| || Sbjct 19943 ATTCAAAAAGAATCAACCCTACATTTGGT 19971 >seq39894 Length=23042 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||||||||| | ||||||||| | || || | |||||||| | | Sbjct 12698 ATGCAGATTTTTGTAAAAACGCTCACTGGAAAAACCATCACTTTGGAAGTCGAACCGTCC 12639 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || ||||| | || ||| ||| ||| |||||||||||||| || || |||||| Sbjct 12638 GATACGATCGAAAACGTAAAAGCAAAAATTCAGGACAAAGAAGGCATTCCACCTGATCAA 12579 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || |||| | | ||| || ||| | ||||| | ||| ||||||||||||| Sbjct 12578 CAACGATTGATCTTTGCCGGAAAACAATTGGAAGACGGTCGAACTCTCAGCGATTATAAT 12519 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||||||| |||||||| ||||||| || ||| Sbjct 12518 ATTCAAAAGGAATCTACTCTTCATTTGGTCTTA 12486 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| | || || || | || || | ||||||||| | | Sbjct 12242 ATGCAAATCTTCGTTAAAACTCTCACCGGCAAGACCATCACTTTGGAAGTCGAGCCGTCC 12183 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || ||||| | || ||| ||| ||| |||||||||||||| || || ||||| Sbjct 12182 GATACGATCGAAAACGTTAAAGCAAAAATTCAGGACAAAGAAGGCATTCCACCTGATCAG 12123 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||| |||| | || ||| || || | ||||||| | | | ||||||||||||| Sbjct 12122 CAAAGATTGATCTTCGCCGGAAAACAGTTAGAAGATGGCCGTACTCTCAGCGATTATAAT 12063 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||||||| |||||||| ||||||| || ||| Sbjct 12062 ATTCAAAAGGAATCTACTCTTCATTTGGTCTTA 12030 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || ||||||||||| || |||||| ||||||| | |||||||| | Sbjct 12471 AATGCAAATTTTCGTAAAAACATTGACAGGAAAAACGATTACGTTAGAAGTCGAACCATC 12412 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||| || ||| | || ||| || ||| || || ||||| || || ||||| || Sbjct 12411 CGACACGATTGAGAACGTGAAAGCCAAAATTCAAGATAAGGAAGGTATCCCACCCGACCA 12352 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| || |||||| || ||| || || || || |||| | | ||||||| ||||| Sbjct 12351 ACAACGATTGATTTTCGCCGGTAAACAGCTTGAGGATGGTCGTACACTCAGCGACTATAA 12292 Query 24170 CATTCAAAAAGAATCTAC 24187 || ||||| ||||| || Sbjct 12291 TATCCAAAAGGAATCAAC 12274 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || |||||||| | || |||||| | || || | |||||||| | Sbjct 11786 ATGCAGATTTTCGTAAAAACTCTCACCGGAAAAACCATCACTTTGGAAGTCGAACCGTCG 11727 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || ||||| | || ||| || || || ||||||||||| || ||||| || Sbjct 11726 GATACGATCGAAAACGTAAAAGCGAAAATACAAGATAAAGAAGGCATCCCACCCGACCAG 11667 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || | || | || ||| || ||| | ||||| | | | | | | || |||||||| Sbjct 11666 CAACGATTAATCTTCGCCGGTAAACAATTGGAAGACGGCCGTACCTTGAGTGATTATAAT 11607 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 ||||| ||||| || ||| |||| || |||||| Sbjct 11606 ATTCAGAAAGAGTCCACACTTCACTTGGTGTTA 11574 >seq2470 Length=523 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| | || || || | || || | ||||||||| | | Sbjct 461 ATGCAAATCTTCGTTAAAACTCTCACCGGCAAGACCATCACTTTGGAAGTCGAGCCGTCC 402 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || ||||| | || ||| ||| ||| |||||||||||||| || || ||||| Sbjct 401 GATACGATCGAAAACGTTAAAGCAAAAATTCAGGACAAAGAAGGCATTCCACCTGATCAG 342 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||| |||| | || ||| || || | ||||||| | | | ||||||||||||| Sbjct 341 CAAAGATTGATCTTCGCCGGAAAACAGTTAGAAGATGGCCGTACTCTCAGCGATTATAAT 282 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||||||||||||| || ||||||| || ||| Sbjct 281 ATTCAAAAAGAATCGACTCTTCATTTGGTCTTA 249 >seq38187 Length=9425 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| |||| || ||| | || || | |||||||| | | Sbjct 2986 ATGCAAATTTTCGTTAAAACGCTAACCGGTAAAACAATCACATTGAAAGTCGAGCCATGC 3045 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | ||||| || || || |||||||| || || || |||||| Sbjct 3046 GATACTATTGAAAACGTCAAGGCTAAAATACAGGATAAAGAAGGTATCCCACCGGATCAA 3105 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || | || | || ||| || ||| | |||| | | | | | | |||||||||||| Sbjct 3106 CAACGATTAATCTTCGCCGGTAAACAATTGAAAGACGGCCGTACCTTGAGCGATTATAAC 3165 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||||||||||||| ||| ||||||| |||||| Sbjct 3166 ATTCAAAAAGAATCCACACTTCATTTGGTGTTA 3198 >seq37113 Length=2419 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 24092 AGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAG 24151 |||||| ||||| ||||| || | |||||| || ||| || ||||||||||||| | Sbjct 781 AGGCATTCCTCCTGATCAGCAACGTTTGATTTTCGCCGGTAAACAACTCGAAGATGGACG 722 Query 24152 AAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAG 24211 | | | |||||| ||||| ||||||||||| || | |||||||| || |||||||| Sbjct 721 TACCCTTTCCGATTACAACATCCAAAAAGAATCGACTTTGCATTTAGTATTGAGATTGAG 662 Query 24212 AGGAGG 24217 ||| || Sbjct 661 AGGTGG 656 >seq62430 Length=23789 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 24092 AGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAG 24151 ||| || ||||| |||||||| | |||||| || || || ||||||||||||| | Sbjct 14294 AGGTATTCCTCCTGATCAACAACGTTTGATTTTCGCTGGTAAACAACTCGAAGATGGACG 14353 Query 24152 AAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAG 24211 || | |||||| || || |||||||||||||| | |||||||| ||| |||| || Sbjct 14354 AACTCTTTCCGATTACAATATCCAAAAAGAATCTACGTTGCATTTAGTATTACGATTAAG 14413 Query 24212 AGGAGG 24217 ||| || Sbjct 14414 AGGTGG 14419 >seq24804 Length=9356 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/202 (70%), Gaps = 12/202 (6%) Strand=Plus/Minus Query 104909 CTTCATCTCTAGAAATAAGTTCGTTGCTGTAAGTCAAGCCAGG---TAGAGCCCCttttt 104965 |||| ||||| || || ||||| || ||| ||||||| ||||| ||| ||| | ||| Sbjct 7001 CTTCGTCTCTTGATATCAGTTCATTACTGAAAGTCAATCCAGGCATTAG-GCCTCGCTTT 6943 Query 104966 ttGTGTCTTTAATATAGTAGATGGCAGCAAAACTACCGGAGAAAAAGACACCTTCGACGA 105025 ||| | | || ||| | || |||||||| || || || |||| ||||||||| Sbjct 6942 TTGAGCC---AAAATATT-----GCGGCAAAACTTCCAGAAAAGAAGATACCTTCGACAG 6891 Query 105026 TGGCAAACGCGACCATGCGTTCGGCGAATGTAGCAGTTTGACTTTCAATCCATTTCTGAG 105085 |||||||| | || | ||| | || || || ||||| ||||||||||| ||| Sbjct 6890 CTGCAAACGCTATGATTCTTTCTCCAAAAGTGGCGTTTTGATCAGCAATCCATTTCAGAG 6831 Query 105086 CCCATGTTGCCTTCCGTTTGAC 105107 |||| ||| |||| ||||| Sbjct 6830 CCCAATCTGCTTTCCTCTTGAC 6809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429585679682835