Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq18352 107 2e-18 seq2470 98.7 8e-16 seq39894 93.3 3e-14 >seq18352 Length=35742 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| |||| | ||||||| ||| || || || || ||||| |||||||| || | | Sbjct 19989 CCTCCACGTAAACGAAGTACCAAATGTAGGGTTGATTCTTTTTGAATGTTGTAATCCGAC 19930 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||| || | |||||| || || |||| || || || |||||| ||| Sbjct 19929 AATGTTCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGCTGGTCCGGAGGG 19870 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||||| || |||| ||| || | | | ||||| | |||||| | Sbjct 19869 ATACCCTCTTTATCTTGGATTTTGGCCTTGACGTTTTCGATGGTGTCACTGGGCTCAACT 19810 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||||||| ||||| | ||||| || ||||| ||||| Sbjct 19809 TCGAGGGTGATGGTTTTGCCGGTTAAAGTTTTAACGAAAATTTGCAT 19763 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| || | || |||| || || ||||| || ||||| ||||||||||||| Sbjct 19761 CCTCCTCTGAGACGGAGGACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCGGAA 19702 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | |||| || | |||||| || || | ||||| || |||||||| || Sbjct 19701 AGGGTTCTTCCGTCTTCGAGTTGTTTACCGGCGAAGATAAGACGTTGTTGGTCAGGTGGT 19642 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || || ||||| ||||| ||| || | | | |||||||| || || | Sbjct 19641 ATACCTTCCTTGTCCTGAATTTTGGCCTTGACGTTCTCAATAGTGTCGCTTGGTTCGACT 19582 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||| ||||| ||||| | ||||| || ||||| ||||| Sbjct 19581 TCGAGCGTGATAGTTTTACCGGTTAATGTTTTCACGAAAATTTGCAT 19535 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| ||||| || |||||||| ||||||||||| | | |||| | |||| Sbjct 20202 AGAACCAAATGGAGCGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTTCTACCGTCT 20143 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | ||||| || || |||| | || || |||||| ||| | ||| ||||| || Sbjct 20142 TCGAGCTGTTTTCCGGCGAAAATTAAACGTTGCTGGTCCGGAGGTATGCCTTCTTTATCT 20083 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 |||| ||| || | | | ||||| | |||||| ||||| ||| || ||| Sbjct 20082 TGGATTTTGGCCTTGACATTTTCGATGGTGTCACTGGGCTCTACTTCCAGGGTAATCGTT 20023 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || || || | ||||| || ||||| |||||| Sbjct 20022 TTGCCAGTTAAAGTTTTTACGAAAATTTGCATT 19990 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | || ||||| ||| | ||| || || ||||| ||||| || || | Sbjct 20445 CCACCGCGAAGTCGCAATACCAAATGTAACGTAGATTCTTTTTGGATGTTATAATCCGAA 20386 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| || | || || | |||||||| || ||||||| || || || || ||| Sbjct 20385 AGCGTTCTGCCATCTTCGAGCTGTTTGCCAGCGAAAATAAGACGTTGCTGATCGGGAGGA 20326 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| ||||| || ||||| ||| || | | | || |||| ||||| Sbjct 20325 ATGCCTTCTTTATCTTGAATTTTAGCCTTGACGTTTTCGATGGTATCGCTAGGCTCGACC 20266 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | ||||| ||||||||||||| ||||| || |||||||||||| Sbjct 20265 TCGAGAGTGATTGTTTTTCCGGTCAAGGTTTTCACGAAAATCTGCATT 20218 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||||| | || |||| ||| | || ||||| ||||| ||||||||||| | Sbjct 19305 CCTCCTCGTAATCGGAGAACCAAATGTAAGGTCGACTCTTTTTGAATGTTGTAGTCTGAT 19246 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | |||| || | ||| || || || |||| | || || || || || Sbjct 19245 AGGGTTCTACCGTCTTCGAGTTGCTTTCCGGCGAAAATCAAACGTTGCTGATCTGGCGGT 19186 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || ||||| || ||||| | || || | | | ||||||| || || Sbjct 19185 ATACCTTCTTTATCCTGAATTTTCGCTTTAACGTTTTCAATGGTGTCGCTTGGTTCAACC 19126 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || | |||||| ||||| || |||| |||||| || || |||||||||||| Sbjct 19125 TCGAGGGTGATCGTTTTCCCAGTCAACGTTTTTACGAAGATCTGCATTTTG 19075 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| || | || |||| || || ||||| || ||||| ||||| ||||| | Sbjct 19533 CCTCCTCTGAGACGGAGGACCAAGTGGAGAGTGGATTCTTTTTGAATGTTATAGTCCGAA 19474 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || || | ||||||||| || |||| || || || ||||| || Sbjct 19473 AGTGTGCGGCCATCTTCGAGTTGTTTGCCGGCGAAAATGAGACGTTGCTGGTCGGGGGGA 19414 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||||||||| ||||| ||| || | | | |||||||| ||| || | Sbjct 19413 ATTCCCTCTTTGTCTTGAATTTTTGCCTTGACATTTTCTATAGTGTCGCTGGGTTCGACT 19354 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||| ||||| || |||| || || || ||||| ||||| Sbjct 19353 TCGAGCGTGATCGTTTTGCCAGTCAAGGTCTTCACGAAAATTTGCAT 19307 >seq2470 Length=523 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || |||| || || |||| ||| || || || |||||||| || || |||||| | Sbjct 7 CCACCACGTAACCGAAGGACCAGATGGAGGGTTGATTCCTTTTGGATATTATAGTCGCTC 66 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || |||||||||||||| || |||| | | ||||||||| || Sbjct 67 AATGTACGGCCATCTTCCAATTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCCGGTGGG 126 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || || || ||||| ||| ||||| | | | |||||| || ||| Sbjct 127 ATACCTTCCTTATCTTGAATTTTGGCT--TTCACATTTTCAATCGTGTCGGATGGTTCCA 184 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||| || || ||||||||||| |||||||| || ||||| |||||| Sbjct 185 CTTCCAATGTAATAGTTTTTCCGGTGAGCGTTTTTACGAAAATTTGCATT 234 >seq39894 Length=23042 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 16727 ACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCC 16786 |||| ||| || || || |||||||| || || || ||| | ||| |||| ||| Sbjct 12490 ACCAAATGAAGAGTAGATTCCTTTTGAATATTATAATCGCTGAGAGTTCGACCGTCTTCC 12549 Query 16787 AATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCA 16846 |||||||| || ||| | || | || ||||| || || | ||| |||||||| | Sbjct 12550 AATTGTTTTCCGGCAAAGATCAATCGTTGTTGATCAGGTGGAATGCCTTCTTTGTCCTGA 12609 Query 16847 ATTTGCTGCTTC-ACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTT 16905 |||| ||||| || | | | || ||| || || ||||| ||||||||||| Sbjct 12610 ATTTT-TGCTTTTACGTTTTCGATCGTATCGGACGGTTCGACTTCCAAAGTGATGGTTTT 12668 Query 16906 TCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| || |||||||| |||||||||||||| Sbjct 12669 TCCAGTGAGCGTTTTTACAAAAATCTGCAT 12698 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || |||| || || |||| ||| || || || |||||||| || || |||||| | Sbjct 11788 CCACCACGTAACCGAAGGACCAGATGGAGGGTTGATTCCTTTTGGATATTATAGTCGCTC 11847 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || |||||||||||||| || |||| | | ||||||||| || Sbjct 11848 AATGTACGGCCATCTTCCAATTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCCGGTGGG 11907 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || || || ||||| ||| ||||| | | | |||||| || || Sbjct 11908 ATACCTTCCTTATCTTGAATTTTGGCT--TTCACATTTTCAATCGTGTCGGATGGTTCTA 11965 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||| || || |||||||| || |||||||| || ||||| |||||| Sbjct 11966 CTTCCAACGTAATAGTTTTTCCTGTGAGCGTTTTTACGAAAATTTGCATT 12015 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || |||| || || |||| ||| || || || |||||||| || || |||||| | Sbjct 12700 CCACCACGTAACCGAAGGACCAGATGGAGGGTTGATTCCTTTTGAATATTATAGTCGCTC 12759 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || |||||||||||||| || |||| | | ||||||||| || Sbjct 12760 AACGTACGGCCATCTTCCAATTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCCGGTGGG 12819 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || || || || || ||| ||||| | | | |||||| ||||| Sbjct 12820 ATACCTTCCTTATCCTGGATTTTAGCT--TTCACGTTCTCGATCGTGTCGGACGGCTCGA 12877 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 |||| |||||||| || ||||| || ||||| || || |||||||| ||| Sbjct 12878 CCTCCAAAGTGATGGTCTTGCCGGTGAGAGTTTTAACGAAGATCTGCATCTTG 12930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404757926322430