Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq18440 143 2e-29 seq39894 131 1e-25 seq11988 122 6e-23 seq38187 120 2e-22 seq18352 116 2e-21 seq27679 107 1e-18 seq2470 104 2e-17 >seq18440 Length=13379 Score = 143 bits (158), Expect = 2e-29 Identities = 210/289 (73%), Gaps = 10/289 (3%) Strand=Plus/Plus Query 6319 ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACG 6378 |||| |||||||||||||| |||||||| || || ||||| || || ||| ||| ||| Sbjct 3351 ACCCTACGAAATATTTCGGCTGCGAACTCGGAGCACAGACACAATTCGATTTCAAGCACG 3410 Query 6379 AGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCT 6438 | || || || || ||||| ||||| | | || || |||| || | | ||||| | Sbjct 3411 ATCGTTTTATAGTAAACGGTTCGCACGAAGCGGCTAAATTGCAAGATCTGTTGGACGGAT 3470 Query 6439 TTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTGT-- 6496 |||||||||| ||||| ||||| | ||| |||||||| ||||| || || |||||||| Sbjct 3471 TTATTCGCAAATTTGTACTGTGCCCGGATTGCGATAATCCGGAAACGGATCTTATTGTCA 3530 Query 6497 -GTCTACCAAGAGAAACACCATC-TCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAG 6554 ||| || || || || ||| | |||| ||||| || ||||| || || || | Sbjct 3531 GCGCTA--AAAAGCAA-ACGATCAGCGTAGGG-TGCAAGGCTTGCGGATATCACGGTCCG 3586 Query 6555 CTGGA-TTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCCA 6602 |||| | || | || ||| | ||||| || ||| |||| ||||| ||| Sbjct 3587 TTGGAGTATAAC-CATAAATTGAACACGTTTATATTGAAAAATCCGCCA 3634 >seq39894 Length=23042 Score = 131 bits (144), Expect = 1e-25 Identities = 169/232 (73%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | ||| || |||||||||||||| |||||||||||||| |||| Sbjct 12468 CATT-CCACCGCGAAGACGTAAGACCAAATGAAGAGTAGATTCCTTTTGAATATTATAAT 12526 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | | | || |||| || ||||||||||||||||| || | ||||||||||| | Sbjct 12527 CGCTGAGAGTTCGACCGTCTTCCAATTGTTTTCCGGCAAAGATCAATCGTTGTTGATCAG 12586 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | ||||||||||||| ||||||| || || || | || ||||| || Sbjct 12587 GTGGAATGCCTTCTTTGTCCTGAATTTTTGCTTTTACGTTTTCGATCGTATCGGACGGTT 12646 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||| || || || ||||| || || | ||||| || || |||||||| Sbjct 12647 CGACTTCCAAAGTGATGGTTTTTCCAGTGAGCGTTTTTACAAAAATCTGCAT 12698 Score = 109 bits (120), Expect = 4e-19 Identities = 164/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | ||| || |||||||||||||| |||||||||||||| |||| Sbjct 12012 CATT-CCACCGCGAAGACGTAAGACCAAATGAAGAGTAGATTCCTTTTGAATATTATAAT 12070 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | | | ||| | || ||||| ||||||||||| || || | | ||| ||||| | Sbjct 12071 CGCTGAGAGTACGGCCATCTTCTAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCAG 12130 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | ||||||||||||| ||||||| || || || | || ||||| | Sbjct 12131 GTGGAATGCCTTCTTTGTCCTGAATTTTTGCTTTAACGTTTTCGATCGTATCGGACGGCT 12190 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||| || || || || || || || | ||||| ||||| || ||||| Sbjct 12191 CGACTTCCAAAGTGATGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCAT 12242 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || || | |||| ||| || || |||||||| ||||| || || Sbjct 11786 TACCACCACGTAACCGAAGGACCAGATGGAGGGTTGATTCCTTTTGGATATTATAGTCGC 11845 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| ||| | || || |||||||| ||||| || |||| | |||||| || | | Sbjct 11846 TCAATGTACGGCCATCTTCCAATTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCCGGTG 11905 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| || || |||||| |||||||| | | || || ||| | Sbjct 11906 GGATACCTTCCTTATCTTGAATTTTGGCTTTCACATTTTCAATCGTGTCGGATGGTTCTA 11965 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || ||||||||||| || || | ||||| ||||| || ||||| Sbjct 11966 CTTCCAACGTAATAGTTTTTCCTGTGAGCGTTTTTACGAAAATTTGCAT 12014 >seq11988 Length=5545 Score = 122 bits (134), Expect = 6e-23 Identities = 73/77 (95%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 2883 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTCCGCTATCGGTCTCGT 2942 Query 20007 GGTAATATTTAGCCTTA 20023 ||| |||||||||||| Sbjct 2943 GGTCGTATTTAGCCTTA 2959 >seq38187 Length=9425 Score = 120 bits (132), Expect = 2e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||| |||||||||||||| ||| || |||||||| || ||||| ||| ||| | Sbjct 3201 ACGTAACACCAAATGAAGTGTGGATTCTTTTTGAATGTTATAATCGCTCAAGGTACGGCC 3142 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 ||| | |||||||| ||||| || |||| ||||||||||| | |||| |||||||| Sbjct 3141 GTCTTTCAATTGTTTACCGGCGAAGATTAATCGTTGTTGATCCGGTGGGATACCTTCTTT 3082 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 ||| ||||| ||| || || | | |||||| | || |||| ||||| || Sbjct 3081 ATCCTGTATTTTAGCCTTGACGTTTTCAATAGTATCGCATGGCTCGACTTTCAATGTGAT 3022 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||||| || | ||||| ||||| || ||||| Sbjct 3021 TGTTTTACCGGTTAGCGTTTTAACGAAAATTTGCAT 2986 >seq18352 Length=35742 Score = 116 bits (128), Expect = 2e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| ||||| | ||| | ||||| || |||||| || ||||| || ||||| || | Sbjct 19763 TACCTCCTCTGAGACGGAGGACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCGG 19704 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | | |||| || | |||||| ||||| || || || |||||||| || | | Sbjct 19703 AAAGGGTTCTTCCGTCTTCGAGTTGTTTACCGGCGAAGATAAGACGTTGTTGGTCAGGTG 19644 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| |||||| |||||| ||| || |||| | ||| || | ||| | Sbjct 19643 GTATACCTTCCTTGTCCTGAATTTTGGCCTTGACGTTCTCAATAGTGTCGCTTGGTTCGA 19584 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | || ||||||||||| || || ||||||||||| || ||||| Sbjct 19583 CTTCGAGCGTGATAGTTTTACCGGTTAATGTTTTCACGAAAATTTGCAT 19535 Score = 100 bits (110), Expect = 2e-16 Identities = 162/232 (70%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || ||||||||||| | |||||||| || || |||||||| || ||||| | Sbjct 20221 CATT-CCTCCTCTCAAACGAAGAACCAAATGGAGCGTAGATTCCTTTTGGATGTTGTAGT 20163 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||| | | |||| || | ||||||||||| || |||| ||||| || || | Sbjct 20162 CAGAAAGGGTTCTACCGTCTTCGAGCTGTTTTCCGGCGAAAATTAAACGTTGCTGGTCCG 20103 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | ||||||||| || ||||| ||| ||||| | || || || | | Sbjct 20102 GAGGTATGCCTTCTTTATCTTGGATTTTGGCCTTGACATTTTCGATGGTGTCACTGGGCT 20043 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||| | ||||| ||||| || || || ||||| ||||| || ||||| Sbjct 20042 CTACTTCCAGGGTAATCGTTTTGCCAGTTAAAGTTTTTACGAAAATTTGCAT 19991 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/235 (69%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 38087 ATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATC 38146 ||| ||||| | | ||||| |||||||| | || || ||||| || || ||||| Sbjct 20449 ATTGCCACCGCGAAGTCGCAATACCAAATGTAACGTAGATTCTTTTTGGATGTTATAATC 20390 Query 38147 AGACAAAACACGTTCG----TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGAT 38202 || | ||||| || || | ||||| || || || || || ||||| |||| Sbjct 20389 CGAAAG----CGTTCTGCCATCTTCGAGCTGTTTGCCAGCGAAAATAAGACGTTGCTGAT 20334 Query 38203 CGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCAC 38262 ||| || | ||||||||| || |||||| ||| || || | || ||||| | | Sbjct 20333 CGGGAGGAATGCCTTCTTTATCTTGAATTTTAGCCTTGACGTTTTCGATGGTATCGCTAG 20274 Query 38263 TTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || | || || ||||| || ||||||||||||||||| |||||||| Sbjct 20273 GCTCGACCTCGAGAGTGATTGTTTTTCCGGTCAAGGTTTTCACGAAAATCTGCAT 20219 >seq27679 Length=10833 Score = 107 bits (118), Expect = 1e-18 Identities = 139/191 (73%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 38128 CCTTT-TGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 ||||| ||||||||||| ||||||| | | | || || ||||| ||||| || || Sbjct 2201 CCTTTCTGAATATTGTAGTCAGACAGAGTCCTGCCATCTTCCAATTGCTTTCCAGCGAAG 2142 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || | ||||| || || | |||| |||||| || || || || ||||| ||||| Sbjct 2141 ATCAAACGTTGCTGGTCCGGTGGGATGCCTTCCTTATCTTGGATCTTCTGCTTTACATTT 2082 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | | | |||| ||| ||||| | |||||||||||||| ||||| ||||||||| Sbjct 2081 TCAATCGAATCTGAGGGTTCGACTTCGAGGGTAATAGTTTTACCAGTCAATGTTTTCACG 2022 Query 38307 AATATCTGCAT 38317 || |||||||| Sbjct 2021 AAAATCTGCAT 2011 >seq2470 Length=523 Score = 104 bits (114), Expect = 2e-17 Identities = 163/232 (70%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | ||| || |||||||||||||| || ||||||||||| |||| Sbjct 231 CATT-CCACCGCGAAGACGTAAGACCAAATGAAGAGTCGATTCTTTTTGAATATTATAAT 289 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | | | ||| | || ||||| ||||||||||| || || | | ||| ||||| | Sbjct 290 CGCTGAGAGTACGGCCATCTTCTAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCAG 349 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | ||||||||||||| ||||||| || || || | || ||||| | Sbjct 350 GTGGAATGCCTTCTTTGTCCTGAATTTTTGCTTTAACGTTTTCGATCGTATCGGACGGCT 409 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||| || || || || || || || | ||||| ||||| || ||||| Sbjct 410 CGACTTCCAAAGTGATGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCAT 461 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || || | |||| ||| || || |||||||| ||||| || || Sbjct 5 TACCACCACGTAACCGAAGGACCAGATGGAGGGTTGATTCCTTTTGGATATTATAGTCGC 64 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| ||| | || || |||||||| ||||| || |||| | |||||| || | | Sbjct 65 TCAATGTACGGCCATCTTCCAATTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCCGGTG 124 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| || || |||||| |||||||| | | || || ||| | Sbjct 125 GGATACCTTCCTTATCTTGAATTTTGGCTTTCACATTTTCAATCGTGTCGGATGGTTCCA 184 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| |||||||||||||| || || | ||||| ||||| || ||||| Sbjct 185 CTTCCAATGTAATAGTTTTTCCGGTGAGCGTTTTTACGAAAATTTGCAT 233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334674278427167