Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq47140 152 7e-32 seq24804 145 1e-29 seq28943 116 5e-21 seq7785 114 2e-20 >seq47140 Length=38879 Score = 152 bits (168), Expect = 7e-32 Identities = 168/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 32922 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 32981 ||||| || || ||||| ||||| | || |||||||||||||| | |||||||| | Sbjct 14418 TCTTTTACGTAAGTATCGATCAATAAGCTGTACATTTCCGAATGTACATTTTCAATAGTG 14359 Query 32982 ATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT 33041 |||||||||||||||||| ||| || || | ||| ||||| ||| | | || ||||| Sbjct 14358 ATTTGAAATCCGTAGAAGAATCGGGCTTCAGGAATTTGTACCTCTTGAAAGAAACGTTCG 14299 Query 33042 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 33101 ||||||| ||||| || || || || ||||| |||||||||||||| || || Sbjct 14298 ACTAAATTCTCATTAACGATACCATCGGACGCTGCGAAAAACGCCAATACGTGCGAAATG 14239 Query 33102 AAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 33145 || | ||||| |||||| | ||||| | |||||| ||| ||| Sbjct 14238 AACTTCTTTTCTTCTGGTTTCAGTTTCTCCCAATCTCTGAAATC 14195 Score = 113 bits (124), Expect = 6e-20 Identities = 158/221 (71%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744 |||||||| |||||||| || || || | ||| ||||| || || | ||| || Sbjct 14729 TCGTCTCTCGATATTAATTCATTACTGAAAGTCAATCCAGGCATAAGACCTCTCTTCTTG 14670 Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 32804 ||||||||||| | |||||| ||| |||||||| |||||||| || || ||||| || Sbjct 14669 AGCCAAAATATCGCCGCAAAACTTCCCGAAAAGAAGATTCCTTCGACAGCTGCAAACGCT 14610 Query 32805 ATAAGTCTCTCTCCATAACCGGCGCT---GTCATGTATCCACTTTTGAGCCCAATCGGCC 32861 || | || |||||| || ||| | |||| |||||| | |||||||| || Sbjct 14609 ATTATCCTTTCTCCAAAAGTAGCGTTTTGGTCAGCTATCCATCTCAATGCCCAATCTGCT 14550 Query 32862 TTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 32902 || | || || ||||||||||| || ||||| || || || Sbjct 14549 TTTCTCTTCACGCAAGGCATTGTTTCGATAGCGTTGAATAG 14509 Score = 82.4 bits (90), Expect = 1e-10 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 32490 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 32549 |||||||| || |||||||| ||||| || ||||| | ||||| |||||||| || | Sbjct 14991 AATCTATCGGCTACAAATTCAATATAGGTCTTCATTAATTCACTGTTCATTCCAATCATC 14932 Query 32550 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTC 32599 ||||||||||| | || | |||||||||||| ||| || ||||| Sbjct 14931 GATACTGGAAGAGCATCGGTCAAAAATTCTTGTTCGATAATAACAGCGTC 14882 >seq24804 Length=9356 Score = 145 bits (160), Expect = 1e-29 Identities = 172/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 32913 TCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTT 32972 ||| || ||| ||||| || || || ||||| | |||||||||||| ||||| | || Sbjct 6701 TCAGTAGGATCCTTAACGTAAGTGTCGATCAATAAACTATACATTTCTGAATGTACATTC 6642 Query 32973 TCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAA 33032 ||||| | ||||||||||||||||| |||| || || | ||| || |||||| | | Sbjct 6641 TCAATAGTGATTTGAAATCCGTAGAAAAATCTGGCTTCAGGAATTTGAACTTCTTGAAAG 6582 Query 33033 AATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 33092 || ||||| ||| ||||||||| || || || ||| ||| || ||||| || || || Sbjct 6581 AAACGTTCGACTAGATTTTCATTAACGATACCATCAGAGGCAGCGAAAAATGCTAAAACG 6522 Query 33093 TGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 33145 ||| ||||| | ||||| || ||| | ||||| | |||||| ||| ||| Sbjct 6521 TGTGAAATAAATTTCTTTTCTTCGGGTTTAAGTTTCTCCCAATCTCTGAAATC 6469 Score = 136 bits (150), Expect = 5e-27 Identities = 150/199 (75%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771 || || | ||| ||||||||||| |||||||| ||||||||||| | ||||| |||| Sbjct 6972 AAAGTCAATCCAGGCATTAGGCCTCGCTTTTTGAGCCAAAATATTGCGGCAAAACTTCCA 6913 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT- 32830 |||||||| || ||||| || || ||||| || || | ||| |||||| || |||| | Sbjct 6912 GAAAAGAAGATACCTTCGACAGCTGCAAACGCTATGATTCTTTCTCCAAAAGTGGCGTTT 6853 Query 32831 --GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 32888 ||| ||||| || |||||||||| || ||| | || ||||||||||| || || Sbjct 6852 TGATCAGCAATCCATTTCAGAGCCCAATCTGCTTTCCTCTTGACACAAGGCATGGTTTCA 6793 Query 32889 ATAGCATTAAAGAGATAGT 32907 ||||| || || | | ||| Sbjct 6792 ATAGCGTTGAATAAAAAGT 6774 Score = 96.9 bits (106), Expect = 4e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 32490 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 32549 ||||| || || || ||||| ||||| || ||||| | ||||| ||||||||| || | Sbjct 7263 AATCTGTCGGCCACGAATTCAATATAGGTCTTCATTAATTCACTATTCATTCCGATCATC 7204 Query 32550 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 32609 ||||| | ||| | || | ||||||||||||||| ||| ||||| ||||| Sbjct 7203 GATACTGGTAAAGCGTCGGTTAAAAATTCTTGTTCAATTATGACAGCGTCGCGAATAATT 7144 Query 32610 GATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAA 32669 | | | ||| |||| ||| | | ||||||||| |||||||||||||| ||| Sbjct 7143 TCGGTAATTTCTTCAACACTGGGTTTTTGAACTAAATGTTTGAACATCAAACATGCAAAA 7084 Query 32670 TCGCAGTGTAGACCCT 32685 ||| || | ||||| Sbjct 7083 TCGGTATGCAAACCCT 7068 >seq28943 Length=35018 Score = 116 bits (128), Expect = 5e-21 Identities = 127/166 (77%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 63484 GGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGA 63543 |||||||||||| || || || || |||| || | || ||| || || ||||| |||| Sbjct 14949 GGTAGGAGAAGCATGCGTGAAGTATCTTTCGGATAATAAATTATAGGTTTCAATCGCTGC 15008 Query 63544 GTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTT 63602 ||| ||||| || | |||||||| || || || | ||| ||||||||||| |||| || Sbjct 15009 GTCGATATCTTCACCG-TGAATTCCGACAGCAACTCTCATCAACATGTGCTGTGGTCGTT 15067 Query 63603 CAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63648 |||| | ||| |||||||||||| || || || ||||| ||||| Sbjct 15068 CAACCACCTTTCCGTTTATTTTCAATAAATACGACTTTTCTAAAGT 15113 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 62191 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62250 ||| || |||||||| || || |||| | ||| || ||||| ||||| ||||| | Sbjct 13240 TACCTGGAATTCTCCTGATAAGACTCGTCTAGTATACATATTCGAAGTATATGGTTCGAA 13299 Query 62251 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62310 ||| || |||||||| |||||||||||||| || ||||| ||||||||||| | | | Sbjct 13300 AGATTCGTTATTTCCTAAAATTTGAGCAGTGGAAGCAGTAGGCATAGGTGCGAGTAGAAG 13359 Query 62311 ACTATTTCTAAGACCGTATGTTCTGATTTTATCTTT 62346 |||||| | ||| ||| | | ||||| ||||| Sbjct 13360 TGAATTTCTGACACCATATTGTTTTATTTTTTCTTT 13395 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 62801 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 62860 || || || || | |||||||| |||||||||||||||||||| ||||| ||| Sbjct 14063 ATTTCGGTACATAAATTACTACTTTTGATGGTTCCTAAATTTTGGTGATTTGATTTTCGA 14122 Query 62861 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 62920 || || ||||| ||||| | ||| | ||||| || |||||||||||||| |||| ||| Sbjct 14123 TTGCAGGCATCTTTATATAACATGTAAGGAGTTCCTGTTTCAATCTGAGAGTCTAAAATT 14182 Query 62921 GC 62922 || Sbjct 14183 GC 14184 >seq7785 Length=64017 Score = 114 bits (126), Expect = 2e-20 Identities = 138/187 (74%), Gaps = 8/187 (4%) Strand=Plus/Plus Query 63473 GCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 63532 ||||||||||| ||||| ||||| || ||||| ||||| ||| | || ||| || || Sbjct 9368 GCATTAAATAAAGTAGGGGAAGCATGTGTAAAATATTTTAGAGACATTAAATTATAAGTT 9427 Query 63533 TCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACGCATTAACAT 63588 |||||| ||||| ||||| |||| |||| || || | ||| ||||||||||| Sbjct 9428 TCAATAATCGAGTCAATATCTTCACCATGGATG----CCAACAGAGACCCGCATTAACAT 9483 Query 63589 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63648 ||| || || | ||| || | || ||| |||||||| || ||||| |||||||| || Sbjct 9484 GTGTTGGGGACGTTCGACAACACGGTCGTTGATTTTCAATAAATAGGACTTTTCCAATGT 9543 Query 63649 TTTAAAA 63655 | |||| Sbjct 9544 CTGAAAA 9550 Score = 109 bits (120), Expect = 7e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 ||||||| ||||||||||| | || || | || |||||| || || ||||||| Sbjct 7320 TCCATCCATAAAAATGCATCGATGAAAGATTCGCGTACGACGGATCAGCAATGTGGATAT 7379 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 ||| | ||| ||||||||||| || || || || ||||||||||| | ||| |||| Sbjct 7380 TCAAACTTTGTGACTGATCGATGAACGCACCTCTATCGGCAGCCATTTTCAAAATGGTCT 7439 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAA 62066 | ||| ||||||||||| ||||||||||| Sbjct 7440 TCTGTTTAATTTCCCAAACAGTTTTATAAA 7469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633102465817200