Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq39894 152 4e-32 seq2470 150 2e-31 seq18352 136 3e-27 seq38187 120 3e-22 seq62430 96.9 3e-15 seq27679 82.4 7e-11 >seq39894 Length=23042 Score = 152 bits (168), Expect = 4e-32 Identities = 163/213 (77%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || |||||||| || | || || ||| ||||||| | ||||| || |||| Sbjct 12698 ATGCAGATTTTTGTAAAAACGCTCACTGGAAAAACCATCACTTTGGAAGTCGAACCGTCC 12639 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || ||||| || | ||||||||| ||| ||||||||||| ||||||||||| Sbjct 12638 GATACGATCGAAAACGTAA---AAGCAAAAATTCAG-GACAAAGAAGGCATTCCACCTGA 12583 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| || | || |||||||| |||||||| ||||| | ||| ||| | ||||||| Sbjct 12582 TCAACAACGATTGATCTTTGCCGGAAAACAATTGGAAGACGGTCGAACTCTCAGCGATTA 12523 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||||||||||| ||||| || || ||||| || Sbjct 12522 TAATATTCAAAAGGAATCTACTCTTCATTTGGT 12490 Score = 147 bits (162), Expect = 2e-30 Identities = 160/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || ||| | ||||| || ||||||| | ||||| ||| |||| Sbjct 12242 ATGCAAATCTTCGTTAAAACTCTCACCGGCAAGACCATCACTTTGGAAGTCGAGCCGTCC 12183 Query 25059 GACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| | | ||||||||| ||| ||||||||||| ||||||||||| || Sbjct 12182 GATACGATCGAAAACGTTAAAGCAAAAATTCAG-GACAAAGAAGGCATTCCACCTGATCA 12124 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || | | || || ||||| ||||| |||||||||| || ||| | ||||||| || Sbjct 12123 GCAAAGATTGATCTTCGCCGGAAAACAGTTAGAAGATGGCCGTACTCTCAGCGATTATAA 12064 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||||||||| ||||| || || ||||| || Sbjct 12063 TATTCAAAAGGAATCTACTCTTCATTTGGT 12034 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || ||| | ||||| || ||||||| | || || ||| |||| Sbjct 12926 ATGCAGATCTTCGTTAAAACTCTCACCGGCAAGACCATCACTTTGGAGGTCGAGCCGTCC 12867 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| |||| |||||| || || ||||| || ||||| |||||| Sbjct 12866 GACACGATCGAGAACGTGAAAGCTAAAATCCAGGATAAGGAAGGTATCCCACCGGACCAA 12807 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | | ||||| |||||||||||||| ||||||| || || || |||| || ||| Sbjct 12806 CAAAGATTAATTTTCGCCGGCAAACAATTGGAAGATGGCCGTACGTTGAGCGACTATAAT 12747 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| ||||| || || ||| | || || Sbjct 12746 ATTCAAAAGGAATCAACCCTCCATCTGGTCCT 12715 Score = 113 bits (124), Expect = 4e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || ||||| || | || || ||| | || || | ||||| || | || Sbjct 12015 AATGCAAATTTTCGTAAAAACGCTCACAGGAAAAACTATTACGTTGGAAGTAGAACCATC 11956 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || |||| || |||| ||| || || ||||| || ||||| |||| Sbjct 11955 CGACACGATTGAAAATGTGAAAGCCAAAATTCAA-GATAAGGAAGGTATCCCACCGGACC 11897 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| | | ||||| |||||||||||||| ||||||| || || || |||| || | Sbjct 11896 AACAAAGATTAATTTTCGCCGGCAAACAATTGGAAGATGGCCGTACATTGAGCGACTATA 11837 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| ||||| ||||| || || ||| | || || Sbjct 11836 ATATCCAAAAGGAATCAACCCTCCATCTGGTCCT 11803 >seq2470 Length=523 Score = 150 bits (166), Expect = 2e-31 Identities = 161/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || ||| | ||||| || ||||||| | ||||| ||| |||| Sbjct 461 ATGCAAATCTTCGTTAAAACTCTCACCGGCAAGACCATCACTTTGGAAGTCGAGCCGTCC 402 Query 25059 GACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| | | ||||||||| ||| ||||||||||| ||||||||||| || Sbjct 401 GATACGATCGAAAACGTTAAAGCAAAAATTCAG-GACAAAGAAGGCATTCCACCTGATCA 343 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || | | || || ||||| ||||| |||||||||| || ||| | ||||||| || Sbjct 342 GCAAAGATTGATCTTCGCCGGAAAACAGTTAGAAGATGGCCGTACTCTCAGCGATTATAA 283 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||||||||||||||| || || ||||| || Sbjct 282 TATTCAAAAAGAATCGACTCTTCATTTGGT 253 Score = 127 bits (140), Expect = 2e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || ||||| || | ||||| ||| | || ||| | |||||||| | || Sbjct 234 AATGCAAATTTTCGTAAAAACGCTCACCGGAAAAACTATTACATTGGAAGTGGAACCATC 175 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || |||| || |||| ||| || || ||||| || ||||| |||| Sbjct 174 CGACACGATTGAAAATGTGAAAGCCAAAATTCAA-GATAAGGAAGGTATCCCACCGGACC 116 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| | | ||||| |||||||||||||| ||||||| || || || |||| || | Sbjct 115 AACAAAGATTAATTTTCGCCGGCAAACAATTGGAAGATGGCCGTACATTGAGCGACTATA 56 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| ||||| ||||| || || ||| | || || Sbjct 55 ATATCCAAAAGGAATCAACCCTCCATCTGGTCCT 22 >seq18352 Length=35742 Score = 136 bits (150), Expect = 3e-27 Identities = 170/231 (74%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| ||||| || ||| | ||||| ||||||| || | Sbjct 19307 ATGCAAATTTTCGTGAAGACCTTGACTGGCAAAACGATCACGCTCGAAGTCGAACCCAGC 19366 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||||| || |||| | ||||||| ||| |||||||| || ||||| || || Sbjct 19367 GACACTATAGAAAATGTCA---AGGCAAAAATTCAA-GACAAAGAGGGAATTCCCCCCGA 19422 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| || || | ||||| |||||||||||| | ||||||| ||||| | || || Sbjct 19423 CCAGCAACGTCTCATTTTCGCCGGCAAACAACTCGAAGATGGCCGCACACTTTCGGACTA 19482 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||||||||||||||| || || || || || | || |||||||| Sbjct 19483 TAACATTCAAAAAGAATCCACTCTCCACTTGGTCCTCCGTCTCAGAGGAGG 19533 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || ||||| ||||| ||| ||||||| ||||||| ||| | | Sbjct 19763 ATGCAAATTTTCGTTAAAACTTTAACCGGCAAAACCATCACCCTCGAAGTTGAGCCCAGT 19822 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| |||||| || ||||| || || || || ||||| Sbjct 19823 GACACCATCGAAAACGTCAAGGCCAAAATCCAAGATAAAGAGGGTATCCCTCCGGACCAG 19882 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | ||||| ||||| |||||| | ||||| | || || || |||||||| Sbjct 19883 CAACGTCTCATTTTCGCCGGTAAACAACTCGAAGACGGCCGAACATTGTCGGATTACAAC 19942 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||||||||||| || |||||||| || || | || | ||||||| Sbjct 19943 ATTCAAAAAGAATCAACCCTACATTTGGTACTTCGTTTACGTGGAGGAA 19991 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || || ||||||||| | ||||| ||||||| || | Sbjct 19535 ATGCAAATTTTCGTGAAAACATTAACCGGTAAAACTATCACGCTCGAAGTCGAACCAAGC 19594 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||| ||| | ||| | |||| ||| ||||| ||||| || ||||||||||| Sbjct 19595 GACACTATTGAGAACGTCAAGGCCAAAATTCAG-GACAAGGAAGGTATACCACCTGACCA 19653 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || |||| || ||||| |||||| | ||||| | | || | ||| ||||| Sbjct 19654 ACAACGTCTTATCTTCGCCGGTAAACAACTCGAAGACGGAAGAACCCTTTCCGACTACAA 19713 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || |||||||||||||| || || || || || | || |||||||| Sbjct 19714 CATCCAAAAAGAATCCACTCTCCACTTGGTCCTCCGTCTCAGAGGAGG 19761 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || || || |||||||| ||| | ||||| |||| || ||| | Sbjct 20218 AATGCAGATTTTCGTGAAAACCTTGACCGGAAAAACAATCACTCTCGAGGTCGAGCCTAG 20277 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 || || ||||| |||| | || |||| ||| || |||||||| ||||| || | Sbjct 20278 CGATACCATCGAAAACGTCA---AGGCTAAAATTCAA-GATAAAGAAGGCATTCCTCCCG 20333 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | || || || ||||||| || |||||||| | ||||||| | || | |||| Sbjct 20334 ATCAGCAACGTCTTATTTTCGCTGGCAAACAGCTCGAAGATGGCAGAACGCTTTCGGATT 20393 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 | || || ||||||||||| ||| ||||||| || Sbjct 20394 ATAACATCCAAAAAGAATCTACGTTACATTTGGT 20427 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || ||||| || ||||| || ||| | ||||| |||| || || | Sbjct 19078 AATGCAGATCTTCGTAAAAACGTTGACTGGGAAAACGATCACCCTCGAGGTTGAACCAAG 19137 Query 25058 TGACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || | | |||| |||| ||| || |||||||| || || || || | Sbjct 19138 CGACACCATTGAAAACGTTAAAGCGAAAATTCAG-GATAAAGAAGGTATACCGCCAGATC 19196 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || || | ||||| ||||| || ||| | ||||| | | | || | || |||| Sbjct 19197 AGCAACGTTTGATTTTCGCCGGAAAGCAACTCGAAGACGGTAGAACCCTATCAGACTACA 19256 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | ||||||||||| || || ||||||| || || | || ||||||| Sbjct 19257 ACATTCAAAAAGAGTCGACCTTACATTTGGTTCTCCGATTACGAGGAGG 19305 >seq38187 Length=9425 Score = 120 bits (132), Expect = 3e-22 Identities = 158/217 (73%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || | ||||||||| | |||||| | |||| ||| | | Sbjct 2986 ATGCAAATTTTCGTTAAAACGCTAACCGGTAAAACAATCACATTGAAAGTCGAGCCATGC 3045 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || ||||| || |||| | || |||| || || |||||||| || ||||| || Sbjct 3046 GATACTATTGAAAACGTCA---AGGCTAAAATACAG-GATAAAGAAGGTATCCCACCGGA 3101 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| || | || || ||||| |||||||| |||| | || || || ||||||| Sbjct 3102 TCAACAACGATTAATCTTCGCCGGTAAACAATTGAAAGACGGCCGTACCTTGAGCGATTA 3161 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 || ||||||||||||||||| || ||||| ||| || Sbjct 3162 TAACATTCAAAAAGAATCCACACTTCATTTGGTGTTA 3198 >seq62430 Length=23789 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 ||| ||||| ||||| ||||| || | ||||| || || |||||| | ||||||| || Sbjct 14294 AGGTATTCCTCCTGATCAACAACGTTTGATTTTCGCTGGTAAACAACTCGAAGATGGACG 14353 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAG 25219 ||| | |||||||||||| ||||||||||| ||| | |||||||| || | |||| Sbjct 14354 AACTCTTTCCGATTACAATATCCAAAAAGAATCTACGTTGCATTTAGTATTACGATTAAG 14413 Query 25220 AGGAGG 25225 ||| || Sbjct 14414 AGGTGG 14419 >seq27679 Length=10833 Score = 82.4 bits (90), Expect = 7e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || ||||| |||||| | || || ||||||| || | || Sbjct 2011 ATGCAGATTTTCGTGAAAACATTGACTGGTAAAACTATTACCCTCGAAGTCGAACCCTCA 2070 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || | || || | ||||| || ||| || || ||||| || ||||| ||||| Sbjct 2071 GATTCGATTGAAAATGTAAAGCAGAAGATCCAAGATAAGGAAGGCATCCCACCGGACCAG 2130 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || || || || || ||||| ||||||| | ||| || || |||||| Sbjct 2131 CAACGTTTGATCTTCGCTGGAAAGCAATTGGAAGATGGCAGGACTCTGTCTGACTACAAT 2190 Query 25179 ATTCAAAAAG 25188 ||||| |||| Sbjct 2191 ATTCAGAAAG 2200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432974915814455