Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq24804 165 9e-36 seq47140 163 3e-35 seq50196 132 5e-26 seq3200 129 7e-25 seq41127 127 2e-24 >seq24804 Length=9356 Score = 165 bits (182), Expect = 9e-36 Identities = 172/223 (77%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 93114 CTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCT 93173 ||||||||| |||||||| ||||| ||||| || || || || | || ||||| || | Sbjct 7001 CTTCGTCTCTTGATATCAGTTCATTACTGAAAGTCAATCCAGGCATTAGGCCTCGCTTTT 6942 Query 93174 TGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATG 93233 ||||||||||||||| |||||||| |||||||| || |||||||| || |||||||| | Sbjct 6941 TGAGCCAAAATATTGCGGCAAAACTTCCAGAAAAGAAGATACCTTCGACAGCTGCAAACG 6882 Query 93234 CCACAATACGTTCGGCAAAATTTGCGGAATTA-CTGCTGATCCATTTTAAAGCCCAATCG 93292 | | || | ||| ||||| | ||| | | | || |||||||| | ||||||||| Sbjct 6881 CTATGATTCTTTCTCCAAAAGTGGCGTTTTGATCAGC-AATCCATTTCAGAGCCCAATCT 6823 Query 93293 GCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATA 93335 ||||| |||| | |||||| | ||||| |||||||| |||| Sbjct 6822 GCTTTCCTCTTGACACAAGGCATGGTTTCAATAGCGTTGAATA 6780 Score = 134 bits (148), Expect = 2e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 93364 GTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAA 93423 ||| || ||||| || | | ||||||||| ||||| |||||||| || | ||||| || Sbjct 6684 GTAAGTGTCGATCAATAAACTATACATTTCTGAATGTACATTCTCAATAGTGATTTGAAA 6625 Query 93424 TCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATT 93483 |||||||||| |||| ||||| | || || ||||||||| | || | || || ||||| Sbjct 6624 TCCGTAGAAAAATCTGGCTTCAGGAATTTGAACTTCTTGAAAGAAACGTTCGACTAGATT 6565 Query 93484 TTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTT 93543 |||||| || |||||||| || || || ||||| || || | || ||||| | || Sbjct 6564 TTCATTAACGATACCATCAGAGGCAGCGAAAAATGCTAAAACGTGTGAAATAAATTTCTT 6505 Query 93544 CTCATCATCTTTAAGCTTATCCCAATC 93570 || || |||||| || |||||||| Sbjct 6504 TTCTTCGGGTTTAAGTTTCTCCCAATC 6478 >seq47140 Length=38879 Score = 163 bits (180), Expect = 3e-35 Identities = 177/232 (76%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 93114 CTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCT 93173 ||||||||| ||||| || ||||| ||||| || || || || | || |||| |||| Sbjct 14731 CTTCGTCTCTCGATATTAATTCATTACTGAAAGTCAATCCAGGCATAAGACCTCTCTTCT 14672 Query 93174 TGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATG 93233 ||||||||||||| | |||||||| || ||||| || || ||||| || |||||||| | Sbjct 14671 TGAGCCAAAATATCGCCGCAAAACTTCCCGAAAAGAAGATTCCTTCGACAGCTGCAAACG 14612 Query 93234 CCACAATACGTTCGGCAAAATTTGCGGAAT-TACTGCTGATCCATTTTAAAGCCCAATCG 93292 | | || | ||| ||||| | ||| | | ||| |||||| | || |||||||| Sbjct 14611 CTATTATCCTTTCTCCAAAAGTAGCGTTTTGGTCAGCT-ATCCATCTCAATGCCCAATCT 14553 Query 93293 GCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344 |||||| |||| | ||||| | ||||||||||||||| |||||| |||||| Sbjct 14552 GCTTTTCTCTTCACGCAAGGCATTGTTTCGATAGCGTTGAATAGGAAATCTC 14501 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 93361 TATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTG 93420 || ||| |||||||| || | |||||||| ||||| ||||| || || | ||||| Sbjct 14413 TACGTAAGTATCGATCAATAAGCTGTACATTTCCGAATGTACATTTTCAATAGTGATTTG 14354 Query 93421 GAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAG 93480 ||||||||||| ||| ||||| | || || || |||||| | || | || || | Sbjct 14353 AAATCCGTAGAAGAATCGGGCTTCAGGAATTTGTACCTCTTGAAAGAAACGTTCGACTAA 14294 Query 93481 ATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATG 93540 ||| ||||| || ||||||||||| ||||| ||||| ||||||| ||| || || | Sbjct 14293 ATTCTCATTAACGATACCATCGGACGCTGCGAAAAACGCCAATACGTGCGAAATGAACTT 14234 Query 93541 TTTCTCATCATCTTTAAGCTTATCCCAATC 93570 || || || ||| || || |||||||| Sbjct 14233 CTTTTCTTCTGGTTTCAGTTTCTCCCAATC 14204 >seq50196 Length=15342 Score = 132 bits (146), Expect = 5e-26 Identities = 81/85 (95%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| Sbjct 13200 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAAACGGGAGCG 13259 Query 126324 TGGGTTCGAACCCCACACCTGACAA 126348 ||||||||||||||||||||||||| Sbjct 13260 TGGGTTCGAACCCCACACCTGACAA 13284 >seq3200 Length=3124 Score = 129 bits (142), Expect = 7e-25 Identities = 80/85 (94%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||| Sbjct 2087 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTAGTTCCCAAACGGGAGCG 2028 Query 126324 TGGGTTCGAACCCCACACCTGACAA 126348 ||||||||||||||||||||||||| Sbjct 2027 TGGGTTCGAACCCCACACCTGACAA 2003 >seq41127 Length=5744 Score = 127 bits (140), Expect = 2e-24 Identities = 79/84 (94%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||| Sbjct 992 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAAACGGGAGCG 1051 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||||||||||| Sbjct 1052 TGGGTTCGAACCCCACACCTGACA 1075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556395424468680