Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq42836 105 5e-18 >seq42836 Length=3129 Score = 105 bits (116), Expect = 5e-18 Identities = 81/92 (88%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGGAAC 114390 |||||||| |||||||||||||||| |||||||||||||| || ||| |||||||||||| Sbjct 1440 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGTGGGTACGATCTAAGGAAC 1499 Query 114391 CAAAACTGATATATTGAGCCATTCGTGGTATC 114422 || ||||||| || |||||| |||| ||| || Sbjct 1500 CATAACTGATTTAATGAGCCTTTCGCGGTTTC 1531 Score = 105 bits (116), Expect = 5e-18 Identities = 81/92 (88%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGGAAC 115587 |||||||| |||||||||||||||| |||||||||||||| || ||| |||||||||||| Sbjct 1440 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACGTGGGTACGATCTAAGGAAC 1499 Query 115588 CAAAACTGATATATTGAGCCATTCGTGGTATC 115619 || ||||||| || |||||| |||| ||| || Sbjct 1500 CATAACTGATTTAATGAGCCTTTCGCGGTTTC 1531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396738865739314