Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq39894 158 3e-33 seq18352 152 1e-31 seq38187 134 3e-26 seq2470 118 2e-21 seq37113 102 2e-16 >seq39894 Length=23042 Score = 158 bits (174), Expect = 3e-33 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTC-TAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGG 288304 ||||||||| || | |||| || | ||||| || ||| ||||| |||||||| ||| Sbjct 12471 TCCACCGCGAAGACGTAAG-ACCAAATGAAGAGTAGATTCCTTTTGAATATTATAATCGC 12529 Query 288305 CGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTG 288364 ||| || || |||||||| ||||||||||| || ||||||| || |||||| | || Sbjct 12530 TGAGAGTTCGACCGTCTTCCAATTGTTTTCCGGCAAAGATCAATCGTTGTTGATCAGGTG 12589 Query 288365 GGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTA 288424 | || |||||||| ||||| ||||| ||||| |||||||| || | |||| || ||| | Sbjct 12590 GAATGCCTTCTTTGTCCTGAATTTTTGCTTTTACGTTTTCGATCGTATCGGACGGTTCGA 12649 Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||| | ||||| || || || || || || || || || |||||||| Sbjct 12650 CTTCCAAAGTGATGGTTTTTCCAGTGAGCGTTTTTACAAAAATCTGCAT 12698 Score = 140 bits (154), Expect = 8e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || | | ||| || ||||| | || ||| ||||| |||||||||||| Sbjct 12700 CCACCACGTAACCGAAGGACCAGATGGAGGGTTGATTCCTTTTGAATATTATAGTCGCTC 12759 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||| || || ||||| |||||||| || ||||| || | | ||||| |||| Sbjct 12760 AACGTACGGCCATCTTCCAATTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCCGGTGGG 12819 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| |||||||||||||| ||||||||||| || || | ||| || || || Sbjct 12820 ATACCTTCCTTATCCTGGATTTTAGCTTTCACGTTCTCGATCGTGTCGGACGGCTCGACC 12879 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| ||||| ||||| || ||||| |||||||| Sbjct 12880 TCCAAAGTGATGGTCTTGCCGGTGAGAGTTTTAACGAAGATCTGCAT 12926 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || |||||||| || | || || |||||||| |||||||| || |||||| Sbjct 11596 TCTTTCTGAATATTATAATCACTCAAGGTACGGCCGTCTTCCAATTGTTTACCGGCGAAG 11655 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || | || || || |||||| ||||||||||| || ||||||||||| |||||| Sbjct 11656 ATTAATCGTTGCTGGTCGGGTGGGATGCCTTCTTTATCTTGTATTTTCGCTTTTACGTTT 11715 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || ||| ||||| | ||||| || || ||||| ||||| || ||| Sbjct 11716 TCGATCGTATCCGACGGTTCGACTTCCAAAGTGATGGTTTTTCCGGTGAGAGTTTTTACG 11775 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 11776 AAAATCTGCAT 11786 Score = 127 bits (140), Expect = 5e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || | | ||| || ||||| | || ||| |||||||||||||||||| | Sbjct 12244 CCACCACGTAACCGAAGGACCAGATGGAGGGTTGATTCCTTTTGGATATTATAGTCGCTG 12303 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | ||||| || ||||| |||| || ||||| |||| Sbjct 12304 AGTGTACGACCATCCTCAAGCTGTTTACCGGCGAAAATCAATCGTTGTTGGTCGGGTGGG 12363 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| ||||| || ||||| ||||||||||| || || | ||| | ||| ||| Sbjct 12364 ATACCTTCCTTATCTTGAATTTTGGCTTTCACGTTCTCAATCGTGTCGGATGGTTCGACT 12423 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || | ||| ||||| || || |||| || || ||||| || |||||| Sbjct 12424 TCTAACGTAATCGTTTTTCCTGTCAATGTTTTTACGAAAATTTGCATT 12471 Score = 123 bits (136), Expect = 6e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || | | ||| || ||||| | || ||| |||||||||||||||||| Sbjct 11788 CCACCACGTAACCGAAGGACCAGATGGAGGGTTGATTCCTTTTGGATATTATAGTCGCTC 11847 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || ||||| |||||||| || ||||| || | | ||||| |||| Sbjct 11848 AATGTACGGCCATCTTCCAATTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCCGGTGGG 11907 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| ||||| || ||||| |||||||| ||||| || | ||| | ||||||| Sbjct 11908 ATACCTTCCTTATCTTGAATTTTGGCTTTCACATTTTCAATCGTGTCGGATGGTTCTACT 11967 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || | ||| || || || || || || || || ||||| || |||||| Sbjct 11968 TCCAACGTAATAGTTTTTCCTGTGAGCGTTTTTACGAAAATTTGCATT 12015 >seq18352 Length=35742 Score = 152 bits (168), Expect = 1e-31 Identities = 149/192 (78%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| || ||||||| || || | ||||||||| | |||||| || ||||| Sbjct 19726 TTCTTTTTGGATGTTGTAGTCGGAAAGGGTTCTTCCGTCTTCGAGTTGTTTACCGGCGAA 19667 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| ||||| ||||| | ||| || ||||| || ||||| ||||| || || ||||| Sbjct 19666 GATAAGACGTTGTTGGTCAGGTGGTATACCTTCCTTGTCCTGAATTTTGGCCTTGACGTT 19607 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| ||||| | ||| |||||||||||||| || || ||||| | || || || Sbjct 19606 CTCAATAGTGTCGCTTGGTTCGACTTCGAGCGTGATAGTTTTACCGGTTAATGTTTTCAC 19547 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 19546 GAAAATTTGCAT 19535 Score = 150 bits (166), Expect = 4e-31 Identities = 153/198 (77%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 |||||||| || || ||||| | || || | |||||||| | ||| ||||| ||||| Sbjct 19269 TCTTTTTGAATGTTGTAGTCTGATAGGGTTCTACCGTCTTCGAGTTGCTTTCCGGCGAAA 19210 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| ||| || ||| ||||| || |||||||||||||| ||||||||||| ||| Sbjct 19209 ATCAAACGTTGCTGA---TCTGGCGGTATACCTTCTTTATCCTGAATTTTCGCTTTAACG 19153 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| || | ||||| | ||| || ||||| |||||||| ||||| |||| || || Sbjct 19152 TTTTCAATGGTGTCGCTTGGTTCAACCTCGAGGGTGATCGTTTTCCCAGTCAACGTTTTT 19093 Query 288460 ACGAATATCTGCATTATG 288477 ||||| ||||||||| || Sbjct 19092 ACGAAGATCTGCATTTTG 19075 Score = 145 bits (160), Expect = 2e-29 Identities = 150/195 (77%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || |||||||| | || ||||| || ||||| | |||||| || ||||| Sbjct 19498 TTCTTTTTGAATGTTATAGTCCGAAAGTGTGCGGCCATCTTCGAGTTGTTTGCCGGCGAA 19439 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 || ||||| || || || ||| ||||| ||||| || || ||||| || || || Sbjct 19438 AATGAGACGTTGCTGG---TCGGGGGGAATTCCCTCTTTGTCTTGAATTTTTGCCTTGAC 19382 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||||||||| ||||| | ||| ||||||||||||||||| || || |||| ||||| Sbjct 19381 ATTTTCTATAGTGTCGCTGGGTTCGACTTCGAGCGTGATCGTTTTGCCAGTCAAGGTCTT 19322 Query 288459 GACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 19321 CACGAAAATTTGCAT 19307 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| |||| | ||| | ||| | ||| |||||||||||| ||||| || | Sbjct 20445 CCACCGCGAAGTCGCAATACCAAATGTAACGTAGATTCTTTTTGGATGTTATAATCCGAA 20386 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 ||||| | || ||||| | ||||| || ||||| || ||||| || ||| || Sbjct 20385 AGCGTTCTGCCATCTTCGAGCTGTTTGCCAGCGAAAATAAGACGTTGCTGATCGGGAGGA 20326 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||||||||| || ||||| || || |||||||| || | |||||| | || || Sbjct 20325 ATGCCTTCTTTATCTTGAATTTTAGCCTTGACGTTTTCGATGGTATCGCTAGGCTCGACC 20266 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| ||||| || || ||||||| || || ||||| ||||||||| Sbjct 20265 TCGAGAGTGATTGTTTTTCCGGTCAAGGTTTTCACGAAAATCTGCATT 20218 Score = 111 bits (122), Expect = 4e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 288261 AAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTC 288320 ||| || | ||| | ||| ||| |||||||| || ||||| | || || | ||||| Sbjct 20203 AAGAACCAAATGGAGCGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTTCTACCGTC 20144 Query 288321 TTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATC 288380 ||| | |||||||| ||||| || | ||| || || || || ||||||||||| Sbjct 20143 TTCGAGCTGTTTTCCGGCGAAAATTAAACGTTGCTGGTCCGGAGGTATGCCTTCTTTATC 20084 Query 288381 CTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGT 288440 |||||||| || || || ||||| || | || || | |||||||| || || ||||| Sbjct 20083 TTGGATTTTGGCCTTGACATTTTCGATGGTGTCACTGGGCTCTACTTCCAGGGTAATCGT 20024 Query 288441 CTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || | ||| || ||||| || |||||| Sbjct 20023 TTTGCCAGTTAAAGTTTTTACGAAAATTTGCATT 19990 >seq38187 Length=9425 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 288270 ATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTG 288329 ||||| ||| ||||||||| || ||||| ||| | || || ||||||| ||||| Sbjct 3189 ATGAAGTGTGGATTCTTTTTGAATGTTATAATCGCTCAAGGTACGGCCGTCTTTCAATTG 3130 Query 288330 TTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTT 288389 ||| || |||||||| | || |||||| |||||| |||||||||||||| ||||| Sbjct 3129 TTTACCGGCGAAGATTAATCGTTGTTGATCCGGTGGGATACCTTCTTTATCCTGTATTTT 3070 Query 288390 CGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGT 288449 || || |||||||| |||| ||||| | || |||| | ||||| || || ||||| Sbjct 3069 AGCCTTGACGTTTTCAATAGTATCGCATGGCTCGACTTTCAATGTGATTGTTTTACCGGT 3010 Query 288450 CAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| || ||||| Sbjct 3009 TAGCGTTTTAACGAAAATTTGCAT 2986 >seq2470 Length=523 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || | | ||| || ||||| | || ||| |||||||||||||||||| Sbjct 7 CCACCACGTAACCGAAGGACCAGATGGAGGGTTGATTCCTTTTGGATATTATAGTCGCTC 66 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || ||||| |||||||| || ||||| || | | ||||| |||| Sbjct 67 AATGTACGGCCATCTTCCAATTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCCGGTGGG 126 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| ||||| || ||||| |||||||| ||||| || | ||| | ||| ||| Sbjct 127 ATACCTTCCTTATCTTGAATTTTGGCTTTCACATTTTCAATCGTGTCGGATGGTTCCACT 186 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || | || || || || ||||| || || || ||||| || |||||| Sbjct 187 TCCAATGTAATAGTTTTTCCGGTGAGCGTTTTTACGAAAATTTGCATT 234 >seq37113 Length=2419 Score = 102 bits (112), Expect = 2e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 |||||||| || || ||||| ||||| || ||||| |||| |||||| | ||| || || Sbjct 855 CCTTCTTTGTCTTGAATTTTGGCTTTTACATTTTCGATAGTATCGCTGGGTTCGACCTCA 914 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| || |||| |||||||||||| |||||||| Sbjct 915 AGAGTGATGGTCTTACCCGTCAAAGTCTTGACGAAAATCTGCAT 958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178643901774046