Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq18352 149 6e-31 seq2470 114 1e-20 seq39894 107 2e-18 seq24804 89.7 5e-13 seq38187 86.0 6e-12 seq37113 86.0 6e-12 >seq18352 Length=35742 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || || | ||| || | ||| | || ||||||||||||||||||||||| | Sbjct 19989 CCTCCACGTAAACGAAGTACCAAATGTAGGGTTGATTCTTTTTGAATGTTGTAATCCGAC 19930 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || ||||||| || || || ||||| ||||||| || |||||||| ||||| Sbjct 19929 AATGTTCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGCTGGTCCGGAGGG 19870 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || ||||| ||||| ||||| ||| || || | || |||| || || ||| Sbjct 19869 ATACCCTCTTTATCTTGGATTTTGGCCTTGACGTTTTCGATGGTGTCACTGGGCTCAACT 19810 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||| |||||||| |||||||| |||||||||||||| Sbjct 19809 TCGAGGGTGATGGTTTTGCCGGTTAAAGTTTTAACGAAAATTTGCAT 19763 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | ||| | ||| || | ||| | ||| ||||| ||||| |||||||| || | Sbjct 20217 CCTCCTCTCAAACGAAGAACCAAATGGAGCGTAGATTCCTTTTGGATGTTGTAGTCAGAA 20158 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||| | ||||||| ||||| || ||||| |||| | || |||||||| ||||| Sbjct 20157 AGGGTTCTACCGTCTTCGAGCTGTTTTCCGGCGAAAATTAAACGTTGCTGGTCCGGAGGT 20098 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || |||||||| ||||| ||||| ||| ||| || | || |||| || || ||| Sbjct 20097 ATGCCTTCTTTATCTTGGATTTTGGCCTTGACATTTTCGATGGTGTCACTGGGCTCTACT 20038 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | || | || ||||| || |||||||||||||||||||||||| Sbjct 20037 TCCAGGGTAATCGTTTTGCCAGTTAAAGTTTTTACGAAAATTTGCATT 19990 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||||||||||||||| || || | | ||||| | ||||| || || |||||| Sbjct 19503 GTGGATTCTTTTTGAATGTTATAGTCCGAAAGTGTGCGGCCATCTTCGAGTTGTTTGCCG 19444 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || ||||||| || ||||||||||| |||||||| ||||| ||||| |||||| ||| Sbjct 19443 GCGAAAATGAGACGTTGCTGGTCGGGGGGAATTCCCTCTTTGTCTTGAATTTTTGCCTTG 19384 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || || | || || ||||| | || | || ||||| ||||| || Sbjct 19383 ACATTTTCTATAGTGTCGCTGGGTTCGACTTCGAGCGTGATCGTTTTGCCAGTCAAGGTC 19324 Query 64427 TTTACGAAAATTTGCAT 64443 || |||||||||||||| Sbjct 19323 TTCACGAAAATTTGCAT 19307 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||| | || | || | ||| | ||| ||||||||||| ||||| ||||| | Sbjct 20445 CCACCGCGAAGTCGCAATACCAAATGTAACGTAGATTCTTTTTGGATGTTATAATCCGAA 20386 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | | ||||| ||||| ||||| || |||| || || ||||| ||||||||| Sbjct 20385 AGCGTTCTGCCATCTTCGAGCTGTTTGCCAGCGAAAATAAGACGTTGCTGATCGGGAGGA 20326 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || |||||||| ||||| ||||| ||| || || | ||||| | | || || Sbjct 20325 ATGCCTTCTTTATCTTGAATTTTAGCCTTGACGTTTTCGATGGTATCGCTAGGCTCGACC 20266 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | ||| | || || |||||||| ||||| |||||||| |||||| Sbjct 20265 TCGAGAGTGATTGTTTTTCCGGTCAAGGTTTTCACGAAAATCTGCATT 20218 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || |||| || || | ||| | ||||| ||||||||||||||||| |||| Sbjct 19306 ACCTCCTCGTAATCGGAGAACCAAATGTAAGGTCGACTCTTTTTGAATGTTGTAGTCTGA 19247 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| | ||||||| || ||||| ||||| |||| | || ||||| || || || Sbjct 19246 TAGGGTTCTACCGTCTTCGAGTTGCTTTCCGGCGAAAATCAAACGTTGCTGATCTGGCGG 19187 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 || |||||||| || || | |||| ||||| || || | || || | | || | Sbjct 19186 TATACCTTCTTTATCCTG-AATTTTCGCTTTAACGTTTTCAATGGTGTCGCTTGGTTCAA 19128 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 | || | || | || || || ||||| ||||||||||| || |||||||| Sbjct 19127 CCTCGAGGGTGATCGTTTTCCCAGTCAACGTTTTTACGAAGATCTGCATTTT 19076 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||||||||| |||||||| || | | ||| | ||||||| || || || ||| Sbjct 19731 GTGGATTCTTTTTGGATGTTGTAGTCGGAAAGGGTTCTTCCGTCTTCGAGTTGTTTACCG 19672 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || || || || ||||| || || || ||||| || || || ||||| ||| Sbjct 19671 GCGAAGATAAGACGTTGTTGGTCAGGTGGTATACCTTCCTTGTCCTGAATTTTGGCCTTG 19612 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || || | | || ||||| | || | || || ||||| || ||| Sbjct 19611 ACGTTCTCAATAGTGTCGCTTGGTTCGACTTCGAGCGTGATAGTTTTACCGGTTAATGTT 19552 Query 64427 TTTACGAAAATTTGCAT 64443 || |||||||||||||| Sbjct 19551 TTCACGAAAATTTGCAT 19535 >seq2470 Length=523 Score = 114 bits (126), Expect = 1e-20 Identities = 159/216 (74%), Gaps = 5/216 (2%) Strand=Plus/Plus Query 64230 TAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGT 64289 |||| || | ||||| ||||||||||||||||| || ||||| || || || | | Sbjct 249 TAAG-ACCAAATGAAGAGTCGATTCTTTTTGAATATTATAATCGCTGAGAGTACGGCCAT 307 Query 64290 CTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTT 64349 |||| | ||| || ||||| | || | | ||||| || || ||||| |||||||| | Sbjct 308 CTTCTAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCAGGTGGAATGCCTTCTTTGT 367 Query 64350 CTTGTATTTTTTGCTTT-ACAACCTCCACTGTATC-ACCGGCGTCCACTTCTACAGTTAC 64407 | || | |||||||||| || || | ||||| |||| || ||||| | ||| | Sbjct 368 CCTG-AATTTTTGCTTTAACGTTTTCGATCGTATCGGACGGC-TCGACTTCCAAAGTGAT 425 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||||||| | |||||| ||||| |||||||| Sbjct 426 GGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCAT 461 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || || | ||| || ||||| | || ||||| ||||| || || || || Sbjct 6 ACCACCACGTAACCGAAGGACCAGATGGAGGGTTGATTCCTTTTGGATATTATAGTCGCT 65 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| | || |||||||| |||| | | || ||||| || || Sbjct 66 CAATGTACGGCCATCTTCCAATTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCCGGTGG 125 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 || ||||| || ||||| ||||| ||||| ||| || | || || | |||| Sbjct 126 GATACCTTCCTTATCTTGAATTTTG-GCTTTCACATTTTCAATCGTGTCGGATGGTTCCA 184 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||| | || | || || ||||| | ||||||||||||||||||||| Sbjct 185 CTTCCAATGTAATAGTTTTTCCGGTGAGCGTTTTTACGAAAATTTGCATT 234 >seq39894 Length=23042 Score = 107 bits (118), Expect = 2e-18 Identities = 148/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || ||||| ||||| || ||||| | ||| || ||||||| | || Sbjct 11584 TGAAGTGTGGACTCTTTCTGAATATTATAATCACTCAAGGTACGGCCGTCTTCCAATTGT 11643 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || ||||| | || | || ||||||||||| || || |||||||| ||||||||||| Sbjct 11644 TTACCGGCGAAGATTAATCGTTGCTGGTCGGGTGGGATGCCTTCTTTATCTTGTATTTTC 11703 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACGGTCTTGCCGG 64418 ||||| || | |||| ||| || || ||||| | ||| | ||| || |||| Sbjct 11704 GCTTTTACGTTTTCGATCGTAT--CCGACGGTTCGACTTCCAAAGTGATGGTTTTTCCGG 11761 Query 64419 TCAAAGTTTTTACGAAAATTTGCAT 64443 | | ||||||||||||||| ||||| Sbjct 11762 TGAGAGTTTTTACGAAAATCTGCAT 11786 Score = 105 bits (116), Expect = 7e-18 Identities = 157/216 (73%), Gaps = 5/216 (2%) Strand=Plus/Plus Query 64230 TAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGT 64289 |||| || | ||||| || ||||| |||||||| || ||||| || || || | | Sbjct 12030 TAAG-ACCAAATGAAGAGTAGATTCCTTTTGAATATTATAATCGCTGAGAGTACGGCCAT 12088 Query 64290 CTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTT 64349 |||| | ||| || ||||| | || | | ||||| || || ||||| |||||||| | Sbjct 12089 CTTCTAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCAGGTGGAATGCCTTCTTTGT 12148 Query 64350 CTTGTATTTTTTGCTTTA-CAACCTCCACTGTATCAC-CGGCGTCCACTTCTACAGTTAC 64407 | || |||||| |||||| | || | ||||| |||| || ||||| | ||| | Sbjct 12149 CCTGAATTTTT-GCTTTAACGTTTTCGATCGTATCGGACGGC-TCGACTTCCAAAGTGAT 12206 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||||||| | |||||| ||||| |||||||| Sbjct 12207 GGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCAT 12242 Score = 105 bits (116), Expect = 7e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || || | ||| || ||||| | || ||||| ||||| || || || || Sbjct 12243 ACCACCACGTAACCGAAGGACCAGATGGAGGGTTGATTCCTTTTGGATATTATAGTCGCT 12302 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || || || | || |||||||| || ||||| |||| | || || |||||||| || Sbjct 12303 GAGTGTACGACCATCCTCAAGCTGTTTACCGGCGAAAATCAATCGTTGTTGGTCGGGTGG 12362 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 || ||||| || ||||| ||||| ||||| || ||| | || || | || | Sbjct 12363 GATACCTTCCTTATCTTGAATTTTG-GCTTTCACGTTCTCAATCGTGTCGGATGGTTCGA 12421 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||||| || | || || || ||||| ||||||||||||||||||||| Sbjct 12422 CTTCTAACGTAATCGTTTTTCCTGTCAATGTTTTTACGAAAATTTGCATT 12471 Score = 89.7 bits (98), Expect = 5e-13 Identities = 165/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || || | ||| || ||||| | || ||||| |||||||| || || || Sbjct 12699 ACCACCACGTAACCGAAGGACCAGATGGAGGGTTGATTCCTTTTGAATATTATAGTCGCT 12758 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| | || |||||||| |||| | | || ||||| || || Sbjct 12759 CAACGTACGGCCATCTTCCAATTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCCGGTGG 12818 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCAC-CGGCGTCC 64393 || ||||| || || || ||||| ||||| || ||| | || || |||| || Sbjct 12819 GATACCTTCCTTATCCTGGATTTTA-GCTTTCACGTTCTCGATCGTGTCGGACGGC-TCG 12876 Query 64394 ACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTAATA 64450 || || | ||| | |||||||||||| | |||||| ||||| || ||||| || ||| Sbjct 12877 ACCTCCAAAGTGATGGTCTTGCCGGTGAGAGTTTTAACGAAGATCTGCATCTTGATA 12933 >seq24804 Length=9356 Score = 89.7 bits (98), Expect = 5e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 132856 CTTCGTCTCTTGATATAAGCTCGTTGCTGAACGTGAGGCCGGGCATGATGCCTTTTGTTT 132915 |||||||||||||||| || || || ||||| || | || ||||| | |||| ||| Sbjct 7001 CTTCGTCTCTTGATATCAGTTCATTACTGAAAGTCAATCCAGGCATTAGGCCTCGCTTTT 6942 Query 132916 TAATAAAAAATATTGCCGCAAAACTGCCCGAAAAGAACACGCCTTCTACAATTGCAAAAG 132975 | | |||||||||| |||||||| || |||||||| | ||||| ||| |||||| | Sbjct 6941 TGAGCCAAAATATTGCGGCAAAACTTCCAGAAAAGAAGATACCTTCGACAGCTGCAAACG 6882 Query 132976 CCACCATTC 132984 | | |||| Sbjct 6881 CTATGATTC 6873 >seq38187 Length=9425 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| | ||||| || ||||||||||||||||| ||||| | ||| || |||||| Sbjct 3195 CACCAAATGAAGTGTGGATTCTTTTTGAATGTTATAATCGCTCAAGGTACGGCCGTCTTT 3136 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 | || || ||||| | || | || || || || || || || |||||||| || || Sbjct 3135 CAATTGTTTACCGGCGAAGATTAATCGTTGTTGATCCGGTGGGATACCTTCTTTATCCTG 3076 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 |||||| ||| || || | ||||| | | || |||| | || | || || Sbjct 3075 TATTTTAGCCTTGACGTTTTCAATAGTATCGCATGGCTCGACTTTCAATGTGATTGTTTT 3016 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| | ||||| |||||||||||||| Sbjct 3015 ACCGGTTAGCGTTTTAACGAAAATTTGCAT 2986 >seq37113 Length=2419 Score = 86.0 bits (94), Expect = 6e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | |||||| | |||| ||| | |||||||||||||| ||||||||||| | Sbjct 655 ACCACCTCTCAATCTCAATACTAAATGCAAAGTCGATTCTTTTTGGATGTTGTAATCGGA 714 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || | ||||| || || || ||||| |||| | || ||||| || ||||| Sbjct 715 AAGGGTACGTCCATCTTCGAGTTGTTTACCGGCGAAAATCAAACGTTGCTGATCAGGAGG 774 Query 64336 AATTCCT 64342 ||| ||| Sbjct 775 AATGCCT 781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499227240595080