Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq27188 84.2 2e-11 >seq27188 Length=4830 Score = 84.2 bits (92), Expect = 2e-11 Identities = 310/480 (65%), Gaps = 23/480 (5%) Strand=Plus/Plus Query 1907 AACGACAGTTGTCGTACAAGGTTTCGGCAAACTCAATGTATGGGGCCACGGGAGTGAGGG 1966 |||| || || || || || ||| || || ||||||||||| |||| ||| || | Sbjct 233 AACGGCAATTATCTTATAAAATTTGTGCTAATTCAATGTATGGTGCCATGGGTGTTAAAT 292 Query 1967 CGGGTGCGCTCCCGTTCATGCCGATAGCCATGTGCGTCACGTTCACCGGAAGACAGTCGA 2026 | |||||| | || || ||||| | || ||||| ||||| | | ||| || || | Sbjct 293 CCGGTGCGTTACCTTTTATGCCTCTTGCAATGTGTGTCACATATAAAGGACGAGAGAGTA 352 Query 2027 TAATAAAGGCGTCGAACATTATCAA----GAGTCTGGGAGGAACGATAGTTTACGGCGAC 2082 | ||| ||| || | ||| | || || | ||| ||||| ||| |||||||||| Sbjct 353 TTCAAAAAGCGGCGCAAATTTTAAAAACCGAAT-TGGAAGGAAAAATAATTTACGGCGAT 411 Query 2083 ACCGACTCGAACTACATAACCTTTGACGACATATCCGGAGAC----CACAAAGACAAATG 2138 || || || || ||| | || || | | || | ||| | ||| ||| ||||| Sbjct 412 ACAGATTCCAATTACGTTACATT---CAATGTA-ACAGAGTCTTCTCACGAAGCTAAATG 467 Query 2139 CGAAAAAATATGGACTCGTGCGCTCGAAACTGCAGATCAAATATCGT-----GCCACTAT 2193 | || ||||||||| | || | || ||||| |||| || | | || | | Sbjct 468 CAAACAAATATGGAACCTCGC---AGTAAATGCAG--CAAACGTCATCAGCAGTCATTTT 522 Query 2194 CCTAAACCGATGAAGATCGAGTTCGAGGAGACGATTTATTACAAGTTCATGATCCTGACT 2253 || | || |||||||| || ||||| | || || || | |||||| | | Sbjct 523 CCAACTCCTATGAAGATTGAATTCGAAAATGAAATGTACGTAAACTACATGATATTATCA 582 Query 2254 AAGAAGCGATACATGTACTACTCTTGTAAACGAACGGGAGAAATATCAAAAAAGATCGGT 2313 || || |||||||||| || |||||||| | || ||||||| | |||| | Sbjct 583 AAAAAAAGATACATGTATTATTCTTGTAAGGAAGACTGAAAAATATCTAGAAAGGTAAAA 642 Query 2314 CAAAAGGGGGTGTTGTTGGCGCGACGCGACCACAGCCAGTTCGTAAAACAGAACTACGAA 2373 || || || ||||| || || || | || | || | || ||||||| || |||||| Sbjct 643 CACAAAGGAGTGTTATTAGCTAGAAGAGATAATAGTAAATTTGTAAAACGGATATACGAA 702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381461724006408