Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq18352 136 4e-27 seq39894 125 7e-24 seq2470 102 8e-17 seq38187 93.3 4e-14 >seq18352 Length=35742 Score = 136 bits (150), Expect = 4e-27 Identities = 171/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| || || | ||| ||||||| | | ||||| ||||||||||||||||| | Sbjct 19305 CCTCCTCGTAATCGGAGAACCAAATGTAAGGTCGACTCTTTTTGAATGTTGTAGTC--TG 19248 Query 138448 ATAGTACGCGA--GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 |||| | | ||| |||||||| || |||| | || | ||| || || || || | Sbjct 19247 ATAGGGTTCTACCGTCTTCGAGTTGCTTTCCGGCGAAAATCAAACGTTGCTGATCTGGCG 19188 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCC 138564 ||||||||||||| || ||| |||| | ||||| | ||| | ||||||| | | || Sbjct 19187 GTATACCTTCTTTATC-CTGAATTTTCGCTTTAACGTTTTCAATGGTGTCGCTTGGTTCA 19129 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||||| || | |||||| ||||||| |||||||| || |||||||| Sbjct 19128 ACCTCGAGGGTGATCGTTTTCCCAGTCAACGTTTTTACGAAGATCTGCAT 19079 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || ||||| | || ||||||| | |||| || |||||||||||||| || | Sbjct 19989 CCTCCACGTAAACGAAGTACCAAATGTAGGGTTGATTCTTTTTGAATGTTGTAATCCGAC 19930 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| |||||||||||||||| | || ||||| || ||||||||||| Sbjct 19929 AATGTTCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGCTGGTCCGGAGGG 19870 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| ||||| || |||||| || | | ||| | |||||| | | ||| || Sbjct 19869 ATACCCTCTTTATCTTGGATTTTGGCCTTGACGTTTTCGATGGTGTCACTGGGCTCAACT 19810 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | ||||| || || | |||||| || ||||| ||||| Sbjct 19809 TCGAGGGTGATGGTTTTGCCGGTTAAAGTTTTAACGAAAATTTGCAT 19763 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| |||||| | ||| ||||| | | || |||||||| ||||||||||| Sbjct 20217 CCTCCTCTCAAACGAAGAACCAAATGGAGCGTAGATTCCTTTTGGATGTTGTAGTCAGAA 20158 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | ||| ||||| ||||| |||| | |||| ||| || |||||||||||| Sbjct 20157 AGGGTTCTACCGTCTTCGAGCTGTTTTCCGGCGAAAATTAAACGTTGCTGGTCCGGAGGT 20098 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || |||||||| || |||||| || | | ||| | |||||| | | ||| || Sbjct 20097 ATGCCTTCTTTATCTTGGATTTTGGCCTTGACATTTTCGATGGTGTCACTGGGCTCTACT 20038 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||| ||||| | ||||||||| ||||| ||||| Sbjct 20037 TCCAGGGTAATCGTTTTGCCAGTTAAAGTTTTTACGAAAATTTGCAT 19991 Score = 105 bits (116), Expect = 7e-18 Identities = 142/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || || ||||| |||||||||||| | || | ||| |||||||||||||||| Sbjct 19728 GATTCTTTTTGGATGTTGTAGTCGGAAAGGGTTCTTCCGTCTTCGAGTTGTTTACCGGCG 19669 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 |||| ||||| |||||||| || ||||||||||| ||||| ||| |||| | || | Sbjct 19668 AAGATAAGACGTTGTTGGTCAGGTGGTATACCTTCCTTGTC-CTGAATTTTGGCCTTGAC 19610 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | |||||| | | || || |||| ||| | |||||||| || | ||||| Sbjct 19609 GTTCTCAATAGTGTCGCTTGGTTCGACTTCGAGCGTGATAGTTTTACCGGTTAATGTTTT 19550 Query 138600 TACAAAAATCTGCAT 138614 || ||||| ||||| Sbjct 19549 CACGAAAATTTGCAT 19535 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || || ||||||||||| ||||| | || || || ||||||||||| |||| Sbjct 19500 GATTCTTTTTGAATGTTATAGTCCGAAAGTGTGCGGCCATCTTCGAGTTGTTTGCCGGCG 19441 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 | || ||||| || ||||| || || || || |||||||| ||| |||||| || | Sbjct 19440 AAAATGAGACGTTGCTGGTCGGGGGGAATTCCCTCTTTGTC-TTGAATTTTTGCCTTGAC 19382 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | ||| | |||||| | | || || |||| ||| | |||||| ||||||| || || Sbjct 19381 ATTTTCTATAGTGTCGCTGGGTTCGACTTCGAGCGTGATCGTTTTGCCAGTCAAGGTCTT 19322 Query 138600 TACAAAAATCTGCAT 138614 || ||||| ||||| Sbjct 19321 CACGAAAATTTGCAT 19307 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||||| || ||||||| | || || ||||| ||||| || || Sbjct 20446 GCCACCGCGAAGTCGCAATACCAAATGTAACGTAGATTCTTTTTGGATGTTATAATCCGA 20387 Query 138447 CATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 | || | || | || ||||| ||||| || | | || ||||| || || || |||| Sbjct 20386 AAGCGTTCTGCCA-TCTTCGAGCTGTTTGCCAGCGAAAATAAGACGTTGCTGATCGGGAG 20328 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCC 138564 | || |||||||| || ||| |||| | || | | ||| | ||| ||| | | ||| Sbjct 20327 GAATGCCTTCTTTATCT-TGAATTTTAGCCTTGACGTTTTCGATGGTATCGCTAGGCTCG 20269 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||||| || | ||||| || |||| ||||| || ||||||||||| Sbjct 20268 ACCTCGAGAGTGATTGTTTTTCCGGTCAAGGTTTTCACGAAAATCTGCAT 20219 >seq39894 Length=23042 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| || || ||||| | | || ||||||||||| || || ||||| Sbjct 12472 CCACCGCGAAGACGTAAGACCAAATGAAGAGTAGATTCCTTTTGAATATTATAATCGCTG 12531 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||| || | |||||| |||| | |||| | || ||||| || || || Sbjct 12532 AGAGTTCGACCGTCTTCCAATTGTTTTCCGGCAAAGATCAATCGTTGTTGATCAGGTGGA 12591 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| |||||| ||||| | ||| | || |||| || || || Sbjct 12592 ATGCCTTCTTTGTC-CTGAATTTTTGCTTTTACGTTTTCGATCGTATCGGACGGTTCGAC 12650 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||| || |||||||||||||||||||| Sbjct 12651 TTCCAAAGTGATGGTTTTTCCAGTGAGCGTTTTTACAAAAATCTGCAT 12698 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || || || | || | ||| | | |||| ||||||||||| || ||||||||| Sbjct 12700 CCACCACGTAACCGAAGGACCAGATGGAGGGTTGATTCCTTTTGAATATTATAGTCGCTC 12759 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || | |||||| |||| | |||| | ||||||||||| || Sbjct 12760 AACGTACGGCCATCTTCCAATTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCCGGTGGG 12819 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| || || |||||| ||| | | || | ||||||| || ||| ||| Sbjct 12820 ATACCTTCCTTATCCTGGATTTTAGCTTTCACGTTCTCGATCGTGTCGGACGGCTCGACC 12879 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || || |||||||| || || |||||||| Sbjct 12880 TCCAAAGTGATGGTCTTGCCGGTGAGAGTTTTAACGAAGATCTGCAT 12926 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || || || | || | ||| | | |||| |||||||| || || ||||||||| Sbjct 11788 CCACCACGTAACCGAAGGACCAGATGGAGGGTTGATTCCTTTTGGATATTATAGTCGCTC 11847 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || | |||||| |||| | |||| | ||||||||||| || Sbjct 11848 AATGTACGGCCATCTTCCAATTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCCGGTGGG 11907 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| || || ||| |||| | ||| | | ||| | ||||||| | || || Sbjct 11908 ATACCTTCCTTATC-TTGAATTTTGGCTTTCACATTTTCAATCGTGTCGGATGGTTCTAC 11966 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | ||||| || || || |||||||| ||||| ||||| Sbjct 11967 TTCCAACGTAATAGTTTTTCCTGTGAGCGTTTTTACGAAAATTTGCAT 12014 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| || || || || | | ||||| || ||||| || || || ||| Sbjct 11560 CCACCACGAAGACGTAACACCAAGTGAAGTGTGGACTCTTTCTGAATATTATAATCACTC 11619 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||| || | ||||||||||| |||||| || || ||||| || || Sbjct 11620 AAGGTACGGCCGTCTTCCAATTGTTTACCGGCGAAGATTAATCGTTGCTGGTCGGGTGGG 11679 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || |||||||| || ||||| ||||| | ||| | || || | || || || Sbjct 11680 ATGCCTTCTTTATCTTGTATTTTCGCTTTTACGTTTTCGATCGTATCCGACGGTTCGACT 11739 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| || || ||||||||||| ||||||||||| Sbjct 11740 TCCAAAGTGATGGTTTTTCCGGTGAGAGTTTTTACGAAAATCTGCAT 11786 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| || || ||||| | | || ||||||||||| || || ||||| Sbjct 12016 CCACCGCGAAGACGTAAGACCAAATGAAGAGTAGATTCCTTTTGAATATTATAATCGCTG 12075 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || || | ||||| |||| |||| | | || || || || || Sbjct 12076 AGAGTACGGCCATCTTCTAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCAGGTGGA 12135 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| |||||| ||||| | ||| | || |||| || ||| || Sbjct 12136 ATGCCTTCTTTGTC-CTGAATTTTTGCTTTAACGTTTTCGATCGTATCGGACGGCTCGAC 12194 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || || |||||||| || || || ||||| Sbjct 12195 TTCCAAAGTGATGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCAT 12242 >seq2470 Length=523 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || || || | || | ||| | | |||| |||||||| || || ||||||||| Sbjct 7 CCACCACGTAACCGAAGGACCAGATGGAGGGTTGATTCCTTTTGGATATTATAGTCGCTC 66 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || | |||||| |||| | |||| | ||||||||||| || Sbjct 67 AATGTACGGCCATCTTCCAATTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCCGGTGGG 126 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| || || ||| |||| | ||| | | ||| | ||||||| | ||||| Sbjct 127 ATACCTTCCTTATC-TTGAATTTTGGCTTTCACATTTTCAATCGTGTCGGATGGTTCCAC 185 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| || || || |||||||| ||||| ||||| Sbjct 186 TTCCAATGTAATAGTTTTTCCGGTGAGCGTTTTTACGAAAATTTGCAT 233 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| || || ||||| | | || || |||||||| || || ||||| Sbjct 235 CCACCGCGAAGACGTAAGACCAAATGAAGAGTCGATTCTTTTTGAATATTATAATCGCTG 294 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || || | ||||| |||| |||| | | || || || || || Sbjct 295 AGAGTACGGCCATCTTCTAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCAGGTGGA 354 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| |||||| ||||| | ||| | || |||| || ||| || Sbjct 355 ATGCCTTCTTTGTC-CTGAATTTTTGCTTTAACGTTTTCGATCGTATCGGACGGCTCGAC 413 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || || |||||||| || || || ||||| Sbjct 414 TTCCAAAGTGATGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCAT 461 >seq38187 Length=9425 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 138399 ACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGA 138458 ||| || || ||||| | | || || ||||||||||| || ||||||| ||||| Sbjct 3201 ACGTAACACCAAATGAAGTGTGGATTCTTTTTGAATGTTATAATCGCTCAAGGTACGGCC 3142 Query 138459 GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTT 138518 ||| | | ||||||||||| |||||| || ||||| ||||| || ||||||||||| Sbjct 3141 GTCTTTCAATTGTTTACCGGCGAAGATTAATCGTTGTTGATCCGGTGGGATACCTTCTTT 3082 Query 138519 GTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 || ||||| || | | ||| | || ||| | ||| || | | || | Sbjct 3081 ATCCTGTATTTTAGCCTTGACGTTTTCAATAGTATCGCATGGCTCGACTTTCAATGTGAT 3022 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||||| || || ||||| || ||||| ||||| Sbjct 3021 TGTTTTACCGGTTAGCGTTTTAACGAAAATTTGCAT 2986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495847667309040