Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq39894 159 2e-34 seq2470 127 1e-24 seq18352 122 6e-23 seq38187 111 1e-19 seq62430 87.8 1e-12 >seq39894 Length=23042 Score = 159 bits (176), Expect = 2e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | | ||| || |||||||| ||||| || ||||| || || ||||||||| Sbjct 12472 CCACCGCGAAGACGTAAGACCAAATGAAGAGTAGATTCCTTTTGAATATTATAATCGCTG 12531 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| ||| ||||||| |||||||| || || | ||||| || ||||| || |||| Sbjct 12532 AGAGTTCGACCGTCTTCCAATTGTTTTCCGGCAAAGATCAATCGTTGTTGATCAGGTGGA 12591 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| |||||| |||||| |||| || |||||| ||| || Sbjct 12592 ATGCCTTCTTTGTCCTGAATTTTTGCTTTTACGTTTTCGATCGTATCGGACGGTTCGACT 12651 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || |||||||| || || || |||||||||||||| |||||| Sbjct 12652 TCCAAAGTGATGGTTTTTCCAGTGAGCGTTTTTACAAAAATCTGCATA 12699 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | | ||| || |||||||| ||||| || ||||| || || ||||||||| Sbjct 12016 CCACCGCGAAGACGTAAGACCAAATGAAGAGTAGATTCCTTTTGAATATTATAATCGCTG 12075 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | |||||||| ||||| || ||| | ||||| | || || || |||| Sbjct 12076 AGAGTACGGCCATCTTCTAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCAGGTGGA 12135 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| |||||| ||| || |||| || |||||| || || Sbjct 12136 ATGCCTTCTTTGTCCTGAATTTTTGCTTTAACGTTTTCGATCGTATCGGACGGCTCGACT 12195 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || ||||| || || || |||||||| || || ||||||||| Sbjct 12196 TCCAAAGTGATGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCATA 12243 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || || | | || | ||| ||||| || || ||||| || || || ||||| Sbjct 11788 CCACCACGTAACCGAAGGACCAGATGGAGGGTTGATTCCTTTTGGATATTATAGTCGCTC 11847 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | ||||| ||||||||||| ||| | || || | |||||||| ||| Sbjct 11848 AATGTACGGCCATCTTCCAATTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCCGGTGGG 11907 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || |||||||| || ||||||| ||| ||| |||| || || ||| |||||| Sbjct 11908 ATACCTTCCTTATCTTGAATTTTGGCTTTCACATTTTCAATCGTGTCGGATGGTTCTACT 11967 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| ||||| ||||| || |||||||| ||||||||||| Sbjct 11968 TCCAACGTAATAGTTTTTCCTGTGAGCGTTTTTACGAAAATTTGCAT 12014 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || || | | || | ||| ||||| || || ||||| || || || |||||| Sbjct 12244 CCACCACGTAACCGAAGGACCAGATGGAGGGTTGATTCCTTTTGGATATTATAGTCGCTG 12303 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | || || | ||||| || ||| | ||||| || ||||||||| ||| Sbjct 12304 AGTGTACGACCATCCTCAAGCTGTTTACCGGCGAAAATCAATCGTTGTTGGTCGGGTGGG 12363 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || |||||||| || ||||||| ||| || | || || || ||| ||| || Sbjct 12364 ATACCTTCCTTATCTTGAATTTTGGCTTTCACGTTCTCAATCGTGTCGGATGGTTCGACT 12423 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| ||||| ||||| ||||||| |||||||| ||||||||||| Sbjct 12424 TCTAACGTAATCGTTTTTCCTGTCAATGTTTTTACGAAAATTTGCAT 12470 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | | ||| || || ||||| || || ||||| || || || ||||| || Sbjct 11560 CCACCACGAAGACGTAACACCAAGTGAAGTGTGGACTCTTTCTGAATATTATAATCACTC 11619 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | ||||||| |||||||| || ||| | || || || || |||||| ||| Sbjct 11620 AAGGTACGGCCGTCTTCCAATTGTTTACCGGCGAAGATTAATCGTTGCTGGTCGGGTGGG 11679 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| || || ||||| |||||| |||| || ||||| ||| || Sbjct 11680 ATGCCTTCTTTATCTTGTATTTTCGCTTTTACGTTTTCGATCGTATCCGACGGTTCGACT 11739 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || |||||||| || || ||||||||||| ||||| |||||| Sbjct 11740 TCCAAAGTGATGGTTTTTCCGGTGAGAGTTTTTACGAAAATCTGCATA 11787 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || || | | || | ||| ||||| || || ||||| || || || ||||| Sbjct 12700 CCACCACGTAACCGAAGGACCAGATGGAGGGTTGATTCCTTTTGAATATTATAGTCGCTC 12759 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | ||||| ||||||||||| ||| | || || | |||||||| ||| Sbjct 12760 AACGTACGGCCATCTTCCAATTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCCGGTGGG 12819 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || |||||||| || ||||| ||| || | || || || ||| || || Sbjct 12820 ATACCTTCCTTATCCTGGATTTTAGCTTTCACGTTCTCGATCGTGTCGGACGGCTCGACC 12879 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || || || ||||| || || || |||||||| || || || ||||| || Sbjct 12880 TCCAAAGTGATGGTCTTGCCGGTGAGAGTTTTAACGAAGATCTGCATCTT 12929 >seq2470 Length=523 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | | ||| || |||||||| || || |||||||| || || ||||||||| Sbjct 235 CCACCGCGAAGACGTAAGACCAAATGAAGAGTCGATTCTTTTTGAATATTATAATCGCTG 294 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | |||||||| ||||| || ||| | ||||| | || || || |||| Sbjct 295 AGAGTACGGCCATCTTCTAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCAGGTGGA 354 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| |||||| ||| || |||| || |||||| || || Sbjct 355 ATGCCTTCTTTGTCCTGAATTTTTGCTTTAACGTTTTCGATCGTATCGGACGGCTCGACT 414 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || ||||| || || || |||||||| || || ||||||||| Sbjct 415 TCCAAAGTGATGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCATA 462 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || || | | || | ||| ||||| || || ||||| || || || ||||| Sbjct 7 CCACCACGTAACCGAAGGACCAGATGGAGGGTTGATTCCTTTTGGATATTATAGTCGCTC 66 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | ||||| ||||||||||| ||| | || || | |||||||| ||| Sbjct 67 AATGTACGGCCATCTTCCAATTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCCGGTGGG 126 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || |||||||| || ||||||| ||| ||| |||| || || ||| ||| || Sbjct 127 ATACCTTCCTTATCTTGAATTTTGGCTTTCACATTTTCAATCGTGTCGGATGGTTCCACT 186 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| ||||| || || || |||||||| ||||||||||| Sbjct 187 TCCAATGTAATAGTTTTTCCGGTGAGCGTTTTTACGAAAATTTGCAT 233 >seq18352 Length=35742 Score = 122 bits (134), Expect = 6e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || || || || |||||||| |||||||| ||| || |||| ||||||| Sbjct 19743 ACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCGGAAAGGGTTCTTCCGTCTTCG 19684 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | |||||| || ||| | || | ||| |||||||| ||| || ||||||||||| | Sbjct 19683 AGTTGTTTACCGGCGAAGATAAGACGTTGTTGGTCAGGTGGTATACCTTCCTTGTCCTGA 19624 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 |||||| || || | || ||||| ||||| ||| || || | || || |||||| Sbjct 19623 ATTTTGGCCTTGACGTTCTCAATAGTGTCGCTTGGTTCGACTTCGAGCGTGATAGTTTTA 19564 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || | ||||| || |||||||||||| Sbjct 19563 CCGGTTAATGTTTTCACGAAAATTTGCATA 19534 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||| | | ||| ||||| || ||||| || ||||| |||||||| || Sbjct 20217 CCTCCTCTCAAACGAAGAACCAAATGGAGCGTAGATTCCTTTTGGATGTTGTAGTCAGAA 20158 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| ||||||| | ||||| || ||| | || ||||| || ||||| || Sbjct 20157 AGGGTTCTACCGTCTTCGAGCTGTTTTCCGGCGAAAATTAAACGTTGCTGGTCCGGAGGT 20098 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| || || |||||| || ||| |||| || || || || ||||| Sbjct 20097 ATGCCTTCTTTATCTTGGATTTTGGCCTTGACATTTTCGATGGTGTCACTGGGCTCTACT 20038 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | |||||| ||||| || || | ||||||||| ||||||||||| Sbjct 20037 TCCAGGGTAATCGTTTTGCCAGTTAAAGTTTTTACGAAAATTTGCAT 19991 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | || || || ||||| | ||||| |||||||| ||||| ||||| Sbjct 20447 TGCCACCGCGAAGTCGCAATACCAAATGTAACGTAGATTCTTTTTGGATGTTATAATCCG 20388 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 || |||| | ||||| | |||||||||||| | || | ||| || || ||| | Sbjct 20387 AAAGCGTTCTGCCATCTTCGAGCTGTTTGCCAGCGAAAATAAGACGTTGCTGATCGGGAG 20328 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| ||||| || || |||||| || || |||| || ||||||||| || | Sbjct 20327 GAATGCCTTCTTTATCTTGAATTTTAGCCTTGACGTTTTCGATGGTATCGCTAGGCTCGA 20268 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | || || ||||| || |||| ||||| || ||||| ||||| Sbjct 20267 CCTCGAGAGTGATTGTTTTTCCGGTCAAGGTTTTCACGAAAATCTGCAT 20219 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || || || || |||||||| ||||| || || || | | | ||||| Sbjct 19515 ACCAAGTGGAGAGTGGATTCTTTTTGAATGTTATAGTCCGAAAGTGTGCGGCCATCTTCG 19456 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||||||||| ||| | || | ||| || |||||| |||||||| || ||||| | Sbjct 19455 AGTTGTTTGCCGGCGAAAATGAGACGTTGCTGGTCGGGGGGAATTCCCTCTTTGTCTTGA 19396 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| || ||| |||||||||| ||||| ||| || || | || || ||||| Sbjct 19395 ATTTTTGCCTTGACATTTTCTATAGTGTCGCTGGGTTCGACTTCGAGCGTGATCGTTTTG 19336 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| || || || |||||||||||| Sbjct 19335 CCAGTCAAGGTCTTCACGAAAATTTGCATA 19306 Score = 102 bits (112), Expect = 6e-17 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025 || ||||| ||||| || |||||||| ||||||||||| || ||| ||| |||||| Sbjct 19971 ACCAAATGTAGGGTTGATTCTTTTTGAATGTTGTAATCC--GACAATGTTCGGCCGTCTT 19914 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 | | |||||| || ||| | || | ||| || ||||| || || || || || || Sbjct 19913 CGAGTTGTTTACCGGCGAAAATGAGACGTTGCTGGTCCGGAGGGATACCCTCTTTATCTT 19854 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 |||||| || || |||| || || || || || || || | ||| ||||||| Sbjct 19853 GGATTTTGGCCTTGACGTTTTCGATGGTGTCACTGGGCTCAACTTCGAGGGTGATGGTTT 19794 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || || | |||||| || |||||||||||| Sbjct 19793 TGCCGGTTAAAGTTTTAACGAAAATTTGCATA 19762 >seq38187 Length=9425 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 14964 TAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTC 15023 ||| || |||||||| || || |||||||| ||||| |||||||| | | | |||| Sbjct 3198 TAACACCAAATGAAGTGTGGATTCTTTTTGAATGTTATAATCGCTCAAGGTACGGCCGTC 3139 Query 15024 TTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC 15083 || |||||||| || ||| | || || || ||||| || ||| || ||||| || || Sbjct 3138 TTTCAATTGTTTACCGGCGAAGATTAATCGTTGTTGATCCGGTGGGATACCTTCTTTATC 3079 Query 15084 ACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 ||||| || || |||| |||||||||| || || | || || || || Sbjct 3078 CTGTATTTTAGCCTTGACGTTTTCAATAGTATCGCATGGCTCGACTTTCAATGTGATTGT 3019 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||||| || || ||||| || |||||||||||| Sbjct 3018 TTTACCGGTTAGCGTTTTAACGAAAATTTGCATA 2985 >seq62430 Length=23789 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 15073 CCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCT 15132 ||||| ||||| |||||| ||| ||| |||| ||||||||||| ||| || || Sbjct 14220 CCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCGATAGTATCGCTTGGTTCGACCTCG 14161 Query 15133 AAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 | ||| ||||| ||||| |||| |||||| || ||||||||||| ||| Sbjct 14160 AGGGTGATGGTCTTACCCGTCAAAGTTTTCACGAAAATTTGCATGTTT 14113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357100789962245