Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq18352 131 4e-25 seq39894 109 1e-18 seq2470 109 1e-18 seq27679 105 2e-17 >seq18352 Length=35742 Score = 131 bits (144), Expect = 4e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 ||||| || || |||||||||| ||||||||||| | || || || ||||| ||||| Sbjct 20193 TGGAGCGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTTCTACCGTCTTCGAGCTGT 20134 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 ||||||||||| || | ||| |||||||||||| || |||||| || || || || Sbjct 20133 TTTCCGGCGAAAATTAAACGTTGCTGGTCCGGAGGTATGCCTTCTTTATCTTGGATTTTG 20074 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| || ||||| |||||| | | ||||| |||| || ||||| || || || Sbjct 20073 GCCTTGACATTTTCGATGGTGTCACTGGGCTCTACTTCCAGGGTAATCGTTTTGCCAGTT 20014 Query 199607 AGAGTTTTCACAAAAATTTG 199626 | |||||| || |||||||| Sbjct 20013 AAAGTTTTTACGAAAATTTG 19994 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||||||||| || || ||||||| ||||||||| | | || ||||| ||| Sbjct 19746 AGGACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCGGAAAGGGTTCTTCCGTCT 19687 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || || ||||||||||| ||||| || ||||| || || ||||| ||| Sbjct 19686 TCGAGTTGTTTACCGGCGAAGATAAGACGTTGTTGGTCAGGTGGTATACCTTCCTTGTCC 19627 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||| || ||| ||| || | ||||| ||| ||| || || | |||||| || Sbjct 19626 TGAATTTTGGCCTTGACGTTCTCAATAGTGTCGCTTGGTTCGACTTCGAGCGTGATAGTT 19567 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || | |||||||| |||||||| Sbjct 19566 TTACCGGTTAATGTTTTCACGAAAATTTG 19538 Score = 107 bits (118), Expect = 5e-18 Identities = 148/204 (73%), Gaps = 5/204 (2%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 |||||||| ||||| | ||||||||| | | || || || ||||| || ||||||||| Sbjct 19275 GTCGACTCTTTTTGAATGTTGTAGTCTGATAGGGTTCTACCGTCTTCGAGTTGCTTTCCG 19216 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC-TT 199551 ||||| || | ||| ||||| || || || |||||| |||||||| ||| || || Sbjct 19215 GCGAAAATCAAACGTTGCTGATCTGGCGGTATACCTTCTTTATCCTGAAT-TTTCGCTTT 19157 Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 ||| ||| | |||||| ||| ||| || || | |||||||| || || || | || Sbjct 19156 AACGTTTTCAATGGTGTCGCTTGGTTCAACCTCGAGGGTGATCGTTTTCCCAGTCAACGT 19097 Query 199612 TTTCACAAAAATTTGGTACATTTT 199635 ||| || || || || |||||| Sbjct 19096 TTTTACGAAGATCTG---CATTTT 19076 Score = 104 bits (114), Expect = 6e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || || || ||||| | |||||| || | ||| || | || ||||| || || Sbjct 19965 TGTAGGGTTGATTCTTTTTGAATGTTGTAATCCGACAATGTTCGGCCGTCTTCGAGTTGT 19906 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || |||||||| |||||||| |||||||||||| || || ||| || || || || Sbjct 19905 TTACCGGCGAAAATGAGACGTTGCTGGTCCGGAGGGATACCCTCTTTATCTTGGATTTTG 19846 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| ||| ||||| |||||| | | || || || | ||||| || || || || Sbjct 19845 GCCTTGACGTTTTCGATGGTGTCACTGGGCTCAACTTCGAGGGTGATGGTTTTGCCGGTT 19786 Query 199607 AGAGTTTTCACAAAAATTTG 199626 | |||||| || |||||||| Sbjct 19785 AAAGTTTTAACGAAAATTTG 19766 >seq39894 Length=23042 Score = 109 bits (120), Expect = 1e-18 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | | ||| | || ||||| || |||||||| | || || || | ||| Sbjct 12022 CGAAGACGTAAGACCAAATGAAGAGTAGATTCCTTTTGAATATTATAATCGCTGAGAGTA 12081 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| | ||| |||||||||||||| | | ||||| || || ||| ||| Sbjct 12082 CGGCCATCTTCTAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCAGGTGGAATGCCT 12141 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| |||||||| |||||| || ||| ||||| || || | | || || ||||| Sbjct 12142 TCTTTGTCCTGAAT-TTTTGCTTTAACGTTTTCGATCGTATCGGACGGCTCGACTTCCAA 12200 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||||||||| || || ||||| Sbjct 12201 AGTGATGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTG 12239 Score = 102 bits (112), Expect = 2e-16 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || ||||| || || |||||||| | || ||||| ||| || | |||||| Sbjct 12715 AGGACCAGATGGAGGGTTGATTCCTTTTGAATATTATAGTCGCTCAACGTACGGCCATCT 12774 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| || || |||||||| || | | || |||||||| || ||||| ||| Sbjct 12775 TCCAATTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCCGGTGGGATACCTTCCTTATCC 12834 Query 199538 TGAATCTTTTGCTT-CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || || ||| |||| |||| |||| ||||| | | || || ||||| ||||| || Sbjct 12835 TGGAT-TTTAGCTTTCACGTTCTCGATCGTGTCGGACGGCTCGACCTCCAAAGTGATGGT 12893 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||||||||| || || || || Sbjct 12894 CTTGCCGGTGAGAGTTTTAACGAAGATCTG 12923 Score = 91.5 bits (100), Expect = 3e-13 Identities = 143/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| || || ||||| || || | || || ||| ||| || | || ||||||| || Sbjct 11583 GTGAAGTGTGGACTCTTTCTGAATATTATAATCACTCAAGGTACGGCCGTCTTCCAATTG 11642 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 || ||||||||||| | || |||||||| || || |||||| || || || || Sbjct 11643 TTTACCGGCGAAGATTAATCGTTGCTGGTCGGGTGGGATGCCTTCTTTATCTTGTAT-TT 11701 Query 199546 TTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCG 199604 | || || ||| ||||| || || | | ||| || ||||| ||||| || || || | Sbjct 11702 TCGCTTTTACGTTTTCGATCGTATCCGACGGTTCGACTTCCAAAGTGATGGTTTTTCCGG 11761 Query 199605 TGAGAGTTTTCACAAAAATTTG 199626 |||||||||| || ||||| || Sbjct 11762 TGAGAGTTTTTACGAAAATCTG 11783 >seq2470 Length=523 Score = 109 bits (120), Expect = 1e-18 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | | ||| | || |||||||| || ||||| | || || || | ||| Sbjct 241 CGAAGACGTAAGACCAAATGAAGAGTCGATTCTTTTTGAATATTATAATCGCTGAGAGTA 300 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| | ||| |||||||||||||| | | ||||| || || ||| ||| Sbjct 301 CGGCCATCTTCTAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCAGGTGGAATGCCT 360 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| |||||||| |||||| || ||| ||||| || || | | || || ||||| Sbjct 361 TCTTTGTCCTGAAT-TTTTGCTTTAACGTTTTCGATCGTATCGGACGGCTCGACTTCCAA 419 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||||||||| || || ||||| Sbjct 420 AGTGATGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTG 458 >seq27679 Length=10833 Score = 105 bits (116), Expect = 2e-17 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 199451 TTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGC 199510 |||||||||| || |||||| |||||||||| |||||||| |||||||| | ||| ||| Sbjct 2189 TTGTAGTCAGACAGAGTCCTGCCATCTTCCAATTGCTTTCCAGCGAAGATCAAACGTTGC 2130 Query 199511 TGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCT 199570 |||||||| || ||||| || || ||||| ||||| || ||| | | ||| Sbjct 2129 TGGTCCGGTGGGATGCCTTCCTTATCTTGGATCTTCTGCTTTACATTTTCAATCGAATCT 2070 Query 199571 GTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | | ||| || || | || || || ||||| || | |||||||| ||||| || Sbjct 2069 GAGGGTTCGACTTCGAGGGTAATAGTTTTACCAGTCAATGTTTTCACGAAAATCTG 2014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177911729494419