Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq18352 109 6e-19 seq39894 100 3e-16 seq2470 91.5 2e-13 seq62430 84.2 2e-11 >seq18352 Length=35742 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| ||||| | |||| ||| | ||| ||||||||||| |||||||| || Sbjct 20217 CCTCCTCTCAAACGAAGAACCAAATGGAGCGTAGATTCCTTTTGGATGTTGTAGTCAGAA 20158 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || | |||| |||||||| || |||||||| || || || |||||||| | || Sbjct 20157 AGGGTTCTACCGTCTTCGAGCTGTTTTCCGGCGAAAATTAAACGTTGCTGGTCCGGAGGT 20098 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || || || || ||| || ||||| | | | ||||| || | || || Sbjct 20097 ATGCCTTCTTTATCTTGGATTTTGGCCTTGACATTTTCGATGGTGTCACTGGGCTCTACT 20038 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| || || |||||||| || | ||||| || || ||||||||| Sbjct 20037 TCCAGGGTAATCGTTTTGCCAGTTAAAGTTTTTACGAAAATTTGCATT 19990 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | ||| | |||| || | || || ||||| || || ||||| || Sbjct 19533 CCTCCTCTGAGACGGAGGACCAAGTGGAGAGTGGATTCTTTTTGAATGTTATAGTCCGAA 19474 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || ||||| || ||||||||||| || | || |||||||||| || Sbjct 19473 AGTGTGCGGCCATCTTCGAGTTGTTTGCCGGCGAAAATGAGACGTTGCTGGTCGGGGGGA 19414 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||| ||||| || || ||||| | | | |||||||| | ||| || Sbjct 19413 ATTCCCTCTTTGTCTTGAATTTTTGCCTTGACATTTTCTATAGTGTCGCTGGGTTCGACT 19354 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||| |||||||| |||| || || || || |||||||| Sbjct 19353 TCGAGCGTGATCGTTTTGCCAGTCAAGGTCTTCACGAAAATTTGCAT 19307 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | ||| | |||| || | || || |||||||| ||||||||||| Sbjct 19761 CCTCCTCTGAGACGGAGGACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCGGAA 19702 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || | |||| ||||| || || |||||||| || | || || ||||| | || Sbjct 19701 AGGGTTCTTCCGTCTTCGAGTTGTTTACCGGCGAAGATAAGACGTTGTTGGTCAGGTGGT 19642 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||||||| || || ||||| || | | |||||||| | ||| || Sbjct 19641 ATACCTTCCTTGTCCTGAATTTTGGCCTTGACGTTCTCAATAGTGTCGCTTGGTTCGACT 19582 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||| ||||| || || | ||||| || || |||||||| Sbjct 19581 TCGAGCGTGATAGTTTTACCGGTTAATGTTTTCACGAAAATTTGCAT 19535 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | |||||| | |||| ||| | || || ||||| || ||||| || || Sbjct 19989 CCTCCACGTAAACGAAGTACCAAATGTAGGGTTGATTCTTTTTGAATGTTGTAATCCGAC 19930 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || |||| ||||| || || |||||||| || | || |||||||| | || Sbjct 19929 AATGTTCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGCTGGTCCGGAGGG 19870 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||| || || ||| || ||||| | | | ||||| || | || || Sbjct 19869 ATACCCTCTTTATCTTGGATTTTGGCCTTGACGTTTTCGATGGTGTCACTGGGCTCAACT 19810 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||||||||| || | |||||||| || |||||||| Sbjct 19809 TCGAGGGTGATGGTTTTGCCGGTTAAAGTTTTAACGAAAATTTGCAT 19763 >seq39894 Length=23042 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| || |||| ||| | ||| |||||||| ||||| || ||| ||||| || | Sbjct 12027 ACGTAAGACCAAATGAAGAGTAGATTCCTTTTGAATATTATAATCGCTGAGAGTACGGCC 12086 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || | ||| || |||||||| ||||| | ||||| || | || | || || || Sbjct 12087 ATCTTCTAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCAGGTGGAATGCCTTCTTT 12146 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 |||| ||| || | ||| | ||| | | ||| ||| || || || |||| |||| Sbjct 12147 GTCC-TGAATTTTTGCTTTAACGTTTTCGATCGTATCGGACGGCTCGACTTCCAAAGTGA 12205 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| || || |||||||| ||||||||||| Sbjct 12206 TGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCAT 12242 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || | ||| || | |||||||| | || |||||||||||||| |||||| Sbjct 12244 CCACCACGTAACCGAAGGACCAGATGGAGGGTTGATTCCTTTTGGATATTATAGTCGCTG 12303 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || | || || ||||| || |||||||| ||||| || || ||||||| || Sbjct 12304 AGTGTACGACCATCCTCAAGCTGTTTACCGGCGAAAATCAATCGTTGTTGGTCGGGTGGG 12363 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCG-TCGCCACCGTGTCGCTCGATTCCAC 46545 | | ||||| | | ||| || ||| || || | | ||||||| | ||| || Sbjct 12364 ATACCTTCCTTAT-CTTGAATTTTGGCTTTCACGTTCTCAATCGTGTCGGATGGTTCGAC 12422 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || | ||| || ||||| || |||| ||||| || || ||||||||| Sbjct 12423 TTCTAACGTAATCGTTTTTCCTGTCAATGTTTTTACGAAAATTTGCATT 12471 Score = 91.5 bits (100), Expect = 2e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| || |||| ||| | ||| |||||||| ||||| || ||| ||||| || | Sbjct 12483 ACGTAAGACCAAATGAAGAGTAGATTCCTTTTGAATATTATAATCGCTGAGAGTTCGACC 12542 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || | || || ||||| || ||||| || || || || | || | || || || Sbjct 12543 GTCTTCCAATTGTTTTCCGGCAAAGATCAATCGTTGTTGATCAGGTGGAATGCCTTCTTT 12602 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 |||| ||| || | ||| ||| | | ||| ||| || ||| || |||| |||| Sbjct 12603 GTCC-TGAATTTTTGCTTTTACGTTTTCGATCGTATCGGACGGTTCGACTTCCAAAGTGA 12661 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||||| || || |||||||| ||||| || ||||| Sbjct 12662 TGGTTTTTCCAGTGAGCGTTTTTACAAAAATCTGCAT 12698 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || | ||| || | |||||||| | || |||||||| ||||| |||||| Sbjct 12700 CCACCACGTAACCGAAGGACCAGATGGAGGGTTGATTCCTTTTGAATATTATAGTCGCTC 12759 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || | || || | || ||||||||||| || || | || ||||| | || Sbjct 12760 AACGTACGGCCATCTTCCAATTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCCGGTGGG 12819 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||| ||| ||| || || | || | | ||||||| || || || Sbjct 12820 ATACCTTCCTTATCCTGGATTTTAGCTTTCACGTTCTCGATCGTGTCGGACGGCTCGACC 12879 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||| |||||||| ||||| || || |||||||| ||||| ||||| ||| Sbjct 12880 TCCAAAGTGATGGTCTTGCCGGTGAGAGTTTTAACGAAGATCTGCATCTTG 12930 >seq2470 Length=523 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || ||||| ||||| || ||| ||||| || | || || | ||| || |||||||| Sbjct 271 TCTTTTTGAATATTATAATCGCTGAGAGTACGGCCATCTTCTAACTGTTTTCCGGCGAAG 330 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | ||||| || | || | || || |||||| ||| || | ||| | ||| Sbjct 331 ATCAATCTTTGCTGATCAGGTGGAATGCCTTCTTTGTCC-TGAATTTTTGCTTTAACGTT 389 Query 46523 GCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||| ||| || || || |||| |||||||| ||||| || || |||||||| Sbjct 390 TTCGATCGTATCGGACGGCTCGACTTCCAAAGTGATGGTCTTGCCGGTGAGAGTTTTAAC 449 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 450 GAAGATTTGCAT 461 >seq62430 Length=23789 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| |||||||| || || || | |||||| ||| || |||||||||||||| ||||| Sbjct 14420 GCCACCTCTTAATCGTAATACTAAATGCAACGTAGATTCTTTTTGGATATTGTAATCGGA 14361 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 ||||| || | || ||||| || || || ||||| ||||| || || || || Sbjct 14360 AAGAGTTCGTCCATCTTCGAGTTGTTTACCAGCGAAAATCAAACGTTGTTGATC 14307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564766023203640