Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq18352 150 2e-31 seq24804 147 2e-30 seq47140 131 2e-25 seq39894 120 3e-22 seq2470 111 2e-19 >seq18352 Length=35742 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||||||||| | || |||||||| || ||| | || || ||| ||| Sbjct 19990 AATGCAAATTTTCGTAAAAACTTTAACTGGCAAAACGATTACCCTGGAAGTAGAGCCCAG 20049 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||| | || | ||||||| || ||||| || || || | ||||| Sbjct 20050 TGACACCATCGAAAATGTCAAGGCCAAAATCCAAGATAAAGAAGGCATACCTCCGGACCA 20109 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || | |||| ||| || |||||||| || |||| | ||||| |||||||| Sbjct 20110 GCAACGTTTAATTTTCGCCGGAAAACAGCTCGAAGACGGTAGAACCCTTTCTGACTACAA 20169 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||||| | ||||| |||||||| || ||||||||||| || Sbjct 20170 CATCCAAAAGGAATCTACGCTCCATTTGGTTCTTCGTTTGAGAGGAGG 20217 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || |||||||| ||||| |||| ||||| ||| | Sbjct 19307 ATGCAAATTTTCGTGAAGACCTTGACTGGCAAAACGATCACGCTCGAAGTCGAACCCAGC 19366 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | || | |||||| | |||||||||||||||||| ||||||| Sbjct 19367 GACACTATAGAAAATGTCAAGGCAAAAATTCAAGACAAAGAGGGAATTCCCCCCGACCAG 19426 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||||| ||| |||||||| || || || | ||||| || ||||| ||| Sbjct 19427 CAACGTCTCATTTTCGCCGGCAAACAACTCGAAGATGGCCGCACACTTTCGGACTATAAC 19486 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||| ||| | || || || ||||| || ||| | ||||| || Sbjct 19487 ATTCAAAAAGAATCCACTCTCCACTTGGTCCTCCGTCTCAGAGGAGG 19533 Score = 136 bits (150), Expect = 4e-27 Identities = 163/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| | || ||||||||||||||| |||| || ||| ||| Sbjct 19763 ATGCAAATTTTCGTTAAAACTTTAACCGGCAAAACCATCACCCTCGAAGTTGAGCCCAGT 19822 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | ||||| | || | ||||||| || |||||||| || || | ||||| Sbjct 19823 GACACCATCGAAAACG-TCAAGGCCAAAATCCAAGATAAAGAGGGTATCCCTCCGGACCA 19881 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||||| ||| || ||||| || || |||| || || | || ||||| Sbjct 19882 GCAACGTCTCATTTTCGCCGGTAAACAACTCGAAGACGGCCGAACATTGTCGGATTACAA 19941 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTT 38461 ||| ||||| ||| | || || |||||||| || ||||| Sbjct 19942 CATTCAAAAAGAATCAACCCTACATTTGGTACTTCGTTT 19980 Score = 116 bits (128), Expect = 4e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || |||||||||||| | || || ||||| |||||| |||| || || | Sbjct 19076 AAAATGCAGATCTTCGTAAAAACGTTGACTGGGAAAACGATCACCCTCGAGGTTGAACCA 19135 Query 38301 ACCGACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | ||||| | || ||||| |||||| ||||| | || ||||| || || || | || Sbjct 19136 AGCGACACCATTGAAAACG-TTAAAGCGAAAATTCAGGATAAAGAAGGTATACCGCCAGA 19194 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || || || | |||| ||| || || || || || |||| | ||||| ||||| Sbjct 19195 TCAGCAACGTTTGATTTTCGCCGGAAAGCAACTCGAAGACGGTAGAACCCTATCAGACTA 19254 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| || |||| | |||||||| || || || |||| || Sbjct 19255 CAACATTCAAAAAGAGTCGACCTTACATTTGGTTCTCCGATTACGAGGAGG 19305 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| | || || ||||| ||||| |||| ||||| | | | Sbjct 19535 ATGCAAATTTTCGTGAAAACATTAACCGGTAAAACTATCACGCTCGAAGTCGAACCAAGC 19594 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | ||||| | ||||| || || || || | ||||| Sbjct 19595 GACACTATTGAGAACG-TCAAGGCCAAAATTCAGGACAAGGAAGGTATACCACCTGACCA 19653 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || || || | ||| || ||||| || || |||| | ||||| ||||||||| Sbjct 19654 ACAACGTCTTATCTTCGCCGGTAAACAACTCGAAGACGGAAGAACCCTTTCCGACTACAA 19713 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||| | || || || ||||| || ||| | ||||| || Sbjct 19714 CATCCAAAAAGAATCCACTCTCCACTTGGTCCTCCGTCTCAGAGGAGG 19761 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| ||||| | || || ||||| ||||| |||| |||||| | | Sbjct 20218 AATGCAGATTTTCGTGAAAACCTTGACCGGAAAAACAATCACTCTCGAGGTCGAGCCTAG 20277 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 ||| | | | | ||||| | || | ||||| | || ||||| || ||||| |||| | Sbjct 20278 CGATACCATCGAAAACG-TCAAGGCTAAAATTCAAGATAAAGAAGGCATTCCTCCCGATC 20336 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || || || |||| ||| ||||||||||| || || | | || || || || | Sbjct 20337 AGCAACGTCTTATTTTCGCTGGCAAACAGCTCGAAGATGGCAGAACGCTTTCGGATTATA 20396 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||||| ||| | ||| | |||||||| |||| Sbjct 20397 ACATCCAAAAAGAATCTACGTTACATTTGGTATTGCG 20433 >seq24804 Length=9356 Score = 147 bits (162), Expect = 2e-30 Identities = 170/224 (76%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 132919 TCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTG 132978 ||||| || || || ||||| || ||||||||||| || ||||| ||||| || |||||| Sbjct 6999 TCGTCTCTTGATATCAGTTCATTACTGAAAGTCAATCCAGGCATTAGGCCTCGCTTTTTG 6940 Query 132979 AGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCC 133038 ||||||||||| ||||| ||||| || |||||||||| || ||||| || || || || Sbjct 6939 AGCCAAAATATTGCGGCAAAACTTCCAGAAAAGAAGATACCTTCGACAGCTGCAAACGCT 6880 Query 133039 ACCAGGCGCTCGCCGAACGTGGCTTCTTTGCT-GGCGATCCAGCGCAGCGCCCATTCGGC 133097 | | | || || || ||||| | |||| | || ||||| ||| ||||| || | Sbjct 6879 ATGATTCTTTCTCCAAAAGTGGCGT-TTTGATCAGCAATCCATTTCAGAGCCCAATCTG- 6822 Query 133098 CTTTTCT-TTGACGCACGGCATCGTTTCGATGGCGTTCAACAAA 133140 |||| || ||||| || ||||| ||||| || ||||| || ||| Sbjct 6821 CTTTCCTCTTGACACAAGGCATGGTTTCAATAGCGTTGAATAAA 6778 >seq47140 Length=38879 Score = 131 bits (144), Expect = 2e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 132919 TCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTG 132978 ||||| || || || | ||| || ||||||||||| || ||||| || || | || ||| Sbjct 14729 TCGTCTCTCGATATTAATTCATTACTGAAAGTCAATCCAGGCATAAGACCTCTCTTCTTG 14670 Query 132979 AGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCC 133038 ||||||||||| || || ||||| ||||||||||||| || ||||| || || || || Sbjct 14669 AGCCAAAATATCGCCGCAAAACTTCCCGAAAAGAAGATTCCTTCGACAGCTGCAAACGCT 14610 Query 133039 ACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCC 133098 | | | || || || || || | || | || ||||| | || ||||| || | | Sbjct 14609 ATTATCCTTTCTCCAAAAGTAGCGTTTTGGTCAGCTATCCATCTCAATGCCCAATCTG-C 14551 Query 133099 TTTTCT-TTGACGCACGGCATCGTTTCGATGGCGTTCAA 133136 |||||| || ||||| ||||| |||||||| ||||| || Sbjct 14550 TTTTCTCTTCACGCAAGGCATTGTTTCGATAGCGTTGAA 14512 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 133189 TACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCG 133248 ||||||||||| ||||| || || || | ||||||||| ||||| ||| | || || || Sbjct 14388 TACATTTCCGAATGTACATTTTCAATAGTGATTTGAAATCCGTAGAAGAATCGGGCTTCA 14329 Query 133249 ACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTG 133308 | || || |||||| |||||| ||||| | ||| || || ||||| || ||| Sbjct 14328 GGAATTTGTACCTCTTGAAAGAAACGTTCGACTAAATTCTCATTAACGATACCATCGGAC 14269 Query 133309 GCGGCGAAAAAGGCCAGCACGTGCTTGATGAA 133340 || |||||||| |||| |||||| ||||| Sbjct 14268 GCTGCGAAAAACGCCAATACGTGCGAAATGAA 14237 >seq39894 Length=23042 Score = 120 bits (132), Expect = 3e-22 Identities = 160/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||||||||| | || || ||||| || || | || ||||| | | Sbjct 12471 AATGCAAATTTTCGTAAAAACATTGACAGGAAAAACGATTACGTTAGAAGTCGAACCATC 12412 Query 38303 CGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 ||||| | || |||| | |||| ||||| | || || || || || || |||||| Sbjct 12411 CGACACGATTGAGAACG-TGAAAGCCAAAATTCAAGATAAGGAAGGTATCCCACCCGACC 12353 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 |||| || | |||| ||| || |||||||| || || | || || |||| |||||| | Sbjct 12352 AACAACGATTGATTTTCGCCGGTAAACAGCTTGAGGATGGTCGTACACTCAGCGACTATA 12293 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTT 38461 | |||||||||||| | || || ||| |||| || || || Sbjct 12292 ATATCCAAAAGGAATCAACCCTCCATCTGGTCCTTCGGTT 12253 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || |||||||||||||| || ||||||||||| | || ||||| | || Sbjct 12698 ATGCAGATTTTTGTAAAAACGCTCACTGGAAAAACCATCACTTTGGAAGTCGAACCGTCC 12639 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | ||||| | |||| |||||| | |||||||| || ||||| | || || Sbjct 12638 GATACGATCGAAAACG-TAAAAGCAAAAATTCAGGACAAAGAAGGCATTCCACCTGATCA 12580 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || || ||||| |||| |||| || || |||| ||| || || Sbjct 12579 ACAACGATTGATCTTTGCCGGAAAACAATTGGAAGACGGTCGAACTCTCAGCGATTATAA 12520 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 || ||||||||| | || || |||||||| Sbjct 12519 TATTCAAAAGGAATCTACTCTTCATTTGGT 12490 Score = 111 bits (122), Expect = 2e-19 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||||||||||||||| || ||||| || || | || || || | | Sbjct 12015 AATGCAAATTTTCGTAAAAACGCTCACAGGAAAAACTATTACGTTGGAAGTAGAACCATC 11956 Query 38303 CGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 ||||| | || ||| | | |||| ||||| | || || || || || || | |||| Sbjct 11955 CGACACGATTGAAAATG-TGAAAGCCAAAATTCAAGATAAGGAAGGTATCCCACCGGACC 11897 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 |||| | | |||| ||| |||||||| |||| || | || || | | |||||| | Sbjct 11896 AACAAAGATTAATTTTCGCCGGCAAACAATTGGAAGATGGCCGTACATTGAGCGACTATA 11837 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTT 38461 | |||||||||||| | || || ||| |||| || || || Sbjct 11836 ATATCCAAAAGGAATCAACCCTCCATCTGGTCCTTCGGTT 11797 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||||||||| ||||| || ||||||||||| | || ||||| | | Sbjct 11786 ATGCAGATTTTCGTAAAAACTCTCACCGGAAAAACCATCACTTTGGAAGTCGAACCGTCG 11727 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | ||||| | |||| ||||| | || ||||| || || || ||||||| Sbjct 11726 GATACGATCGAAAACG-TAAAAGCGAAAATACAAGATAAAGAAGGCATCCCACCCGACCA 11668 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || | || | ||| || ||||| |||| |||| || ||| | | || || || Sbjct 11667 GCAACGATTAATCTTCGCCGGTAAACAATTGGAAGACGGCCGTACCTTGAGTGATTATAA 11608 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || || || || | || || || |||||| | ||| Sbjct 11607 TATTCAGAAAGAGTCCACACTTCACTTGGTGTTACGT 11571 >seq2470 Length=523 Score = 111 bits (122), Expect = 2e-19 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||||||||||||||| || ||||| || || | || || || | | Sbjct 234 AATGCAAATTTTCGTAAAAACGCTCACCGGAAAAACTATTACATTGGAAGTGGAACCATC 175 Query 38303 CGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 ||||| | || ||| | | |||| ||||| | || || || || || || | |||| Sbjct 174 CGACACGATTGAAAATG-TGAAAGCCAAAATTCAAGATAAGGAAGGTATCCCACCGGACC 116 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 |||| | | |||| ||| |||||||| |||| || | || || | | |||||| | Sbjct 115 AACAAAGATTAATTTTCGCCGGCAAACAATTGGAAGATGGCCGTACATTGAGCGACTATA 56 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTT 38461 | |||||||||||| | || || ||| |||| || || || Sbjct 55 ATATCCAAAAGGAATCAACCCTCCATCTGGTCCTTCGGTT 16 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499754799338880