Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq47140 82.4 9e-11 seq24804 82.4 9e-11 >seq47140 Length=38879 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 119535 TCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAA 119594 ||||||||||| | ||||||||| || ||||| ||||| |||||||| || || | Sbjct 14711 TCATTACTGAAAGTCAATCCAGGCATAAGACCTCTCTTCTTGAGCCAAAATATCGCCGCA 14652 Query 119595 AAACTTCCAGAAAAGAAGATGCCCTCCACA 119624 |||||||| ||||||||||| || || ||| Sbjct 14651 AAACTTCCCGAAAAGAAGATTCCTTCGACA 14622 >seq24804 Length=9356 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 119515 CTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCT 119574 |||| || | || || || ||||||||||| | ||||||||| || |||| || | Sbjct 7001 CTTCGTCTCTTGATATCAGTTCATTACTGAAAGTCAATCCAGGCATTAGGCCTCGCTTTT 6942 Query 119575 TTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACA 119624 | |||||||| || || ||||||||||||||||||||| || || ||| Sbjct 6941 TGAGCCAAAATATTGCGGCAAAACTTCCAGAAAAGAAGATACCTTCGACA 6892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588483785394600