Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq18352 113 3e-20 seq39894 104 2e-17 seq27679 82.4 5e-11 >seq18352 Length=35742 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| |||||| |||||||||||||||||||| | || |||| || Sbjct 19515 ACCAAGTGGAGAGTGGATTCTTTTTGAATGTTATAGTCCGAAAGTGTGCGGCCATCTTCG 19456 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || ||||| ||||| || || || ||||||||||| | || | ||||| ||||| | Sbjct 19455 AGTTGTTTGCCGGCGAAAATGAGACGTTGCTGGTCGGGGGGAATTCCCTCTTTGTCTTGA 19396 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || || ||||| | |||| | || | || || || |||| || || ||||| Sbjct 19395 ATTTTTGCCTTGACATTTTCTATAGTGTCGCTGGGTTCGACTTCGAGCGTGATCGTTTTG 19336 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | |||||||| || || |||||| Sbjct 19335 CCAGTCAAGGTCTTCACGAAAATTTGCATA 19306 Score = 96.9 bits (106), Expect = 2e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||| |||||||| || ||||| | |||| | || || || ||||| ||||| || Sbjct 19954 TTCTTTTTGAATGTTGTAATCCGACAATGTTCGGCCGTCTTCGAGTTGTTTACCGGCGAA 19895 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || ||||||||||| | || | ||||| || || || || |||||| Sbjct 19894 AATGAGACGTTGCTGGTCCGGAGGGATACCCTCTTTATCTTGGATTTTGGCCTTGACGTT 19835 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | |||| || |||||| |||| ||| |||||||| || || | ||| || || Sbjct 19834 TTCGATGGTGTCACTGGGCTCAACTTCGAGGGTGATGGTTTTGCCGGTTAAAGTTTTAAC 19775 Query 34970 AAAGATCTGCATA 34982 || || |||||| Sbjct 19774 GAAAATTTGCATA 19762 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| ||||| | | |||||| || | || ||| || || ||||| ||||| | Sbjct 20219 TTCCTCCTCTCAAACGAAGAACCAAATGGAGCGTAGATTCCTTTTGGATGTTGTAGTCAG 20160 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 ||||| ||| | || || |||||||||||||| || |||| ||||||||||| | | Sbjct 20159 AAAGGGTTCTACCGTCTTCGAGCTGTTTTCCGGCGAAAATTAAACGTTGCTGGTCCGGAG 20100 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || || || || || || ||||| | | || | |||| || ||| | Sbjct 20099 GTATGCCTTCTTTATCTTGGATTTTGGCCTTGACATTTTCGATGGTGTCACTGGGCTCTA 20040 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| || ||||| || || | ||| || || || || ||||| Sbjct 20039 CTTCCAGGGTAATCGTTTTGCCAGTTAAAGTTTTTACGAAAATTTGCAT 19991 Score = 89.7 bits (98), Expect = 3e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 ||||| |||||||| ||||| || ||| ||| | || || || || |||||||| || Sbjct 19269 TCTTTTTGAATGTTGTAGTCTGATAGGGTTCTACCGTCTTCGAGTTGCTTTCCGGCGAAA 19210 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | |||||||| ||| |||| | || || || || ||| ||| ||| ||| | Sbjct 19209 ATCAAACGTTGCTGATCTGGCGGTATACCTTCTTTATCCTGAATTTTCGCTTTAACGTTT 19150 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | | ||||| |||| ||| || ||||| || || | || || || Sbjct 19149 TCAATGGTGTCGCTTGGTTCAACCTCGAGGGTGATCGTTTTCCCAGTCAACGTTTTTACG 19090 Query 34971 AAGATCTGCATATT 34984 ||||||||||| || Sbjct 19089 AAGATCTGCATTTT 19076 >seq39894 Length=23042 Score = 104 bits (114), Expect = 2e-17 Identities = 155/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34770 AAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATC 34828 || |||||||||| |||| ||||||||||| ||||| || | |||| | || | || Sbjct 11575 AACACCAAGTGAAGTGTGGACTCTTTCTGAATATTATAATCACTCAAGG-TACGGCCGTC 11633 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 |||| ||||| ||||| || |||| |||||||||||| | || | || || || || Sbjct 11634 TTCCAATTGTTTACCGGCGAAGATTAATCGTTGCTGGTCGGGTGGGATGCCTTCTTTATC 11693 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCG-ATTCACCGGCCTCAACATCGACGGTTATGG 34947 || ||| ||| ||| | | |||| || | ||| || || || | || |||| Sbjct 11694 TTGTATTTTCGCTTTTACGTTTTCGATCGTATCCGACGG-TTCGACTTCCAAAGTGATGG 11752 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||||| |||||||| || || || ||||||||| Sbjct 11753 TTTTTCCGGTGAGAGTTTTTACGAAAATCTGCATA 11787 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34770 AAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCA 34829 || ||||| |||| || ||| || ||||| ||||| || || |||| | || Sbjct 12487 AAGACCAAATGAAGAGTAGATTCCTTTTGAATATTATAATCGCTGAGAGTTCGACCGTCT 12546 Query 34830 TCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34889 |||| |||||||||||||| || | |||||| || || | || | || || ||||| Sbjct 12547 TCCAATTGTTTTCCGGCAAAGATCAATCGTTGTTGATCAGGTGGAATGCCTTCTTTGTCC 12606 Query 34890 CTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||| || ||| ||| | | |||| || | || || || | || |||||| Sbjct 12607 TGAATTTTTGCTTTTACGTTTTCGATCGTATCGGACGGTTCGACTTCCAAAGTGATGGTT 12666 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| ||||| || || ||||| ||||||||| Sbjct 12667 TTTCCAGTGAGCGTTTTTACAAAAATCTGCATA 12699 >seq27679 Length=10833 Score = 82.4 bits (90), Expect = 5e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851 |||||||||| || ||||| || || | | |||| |||| || ||||| || || | Sbjct 2200 CTTTCTGAATATTGTAGTCAGACAGAGTCCTGCCATCTTCCAATTGCTTTCCAGCGAAGA 2141 Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911 | | ||||||||||| | || | || ||||| || |||||||| || || | Sbjct 2140 TCAAACGTTGCTGGTCCGGTGGGATGCCTTCCTTATCTTGGATCTTCTGCTTTACATTTT 2081 Query 34912 CTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAA 34971 | ||||| || || || || |||| ||| || ||||| || || | || ||||| | Sbjct 2080 CAATCGAATCTGAGGGTTCGACTTCGAGGGTAATAGTTTTACCAGTCAATGTTTTCACGA 2021 Query 34972 AGATCTGCAT 34981 | |||||||| Sbjct 2020 AAATCTGCAT 2011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324369082151496