Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq7785 158 1e-33 seq24804 154 2e-32 seq47140 129 7e-25 seq28943 100 3e-16 >seq7785 Length=64017 Score = 158 bits (174), Expect = 1e-33 Identities = 299/434 (69%), Gaps = 6/434 (1%) Strand=Plus/Plus Query 48153 AACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTC 48212 ||||| ||||||||| | || ||||||| ||| | ||||||||| || || || Sbjct 8856 AACCCGGGACATTCACTGGGGCACATCAGACTCCATTTTACATCATTTTCAACCCTTCTC 8915 Query 48213 ATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTG 48272 ||||| ||| || ||||| | ||| |||||||| || | | ||||| || Sbjct 8916 ATAAACTCATCGGGAATCCATAAAGCGTAGAATAAATCTCTTGCACGAGACTCTTCTTTA 8975 Query 48273 CCACTATTCCTTTTAAGTTC-AAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATA 48331 || |||| || | ||||| |||||| || | ||| | | |||||| |||||||| || Sbjct 8976 CCGGAATTCTTTCTCAGTTCCAAGAAA-TCGAAAATAACCGAATGCCAAGGTTCTAAGTA 9034 Query 48332 TATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTT 48391 || || | |||| |||| ||| || ||||||||||| | ||||||||| || || || Sbjct 9035 AATGGCAAAAGCACCCGGTCTTTTGTTGCCTCCTTGATCGACATATCTGGCTGTGTTATT 9094 Query 48392 ATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACT 48451 ||||| | | ||| || || | ||| || |||| ||| || ||||| | ||||| || Sbjct 9095 GTAAACGCGGAGCATAGGAACGAGACCGTTAGATACACCGTTTGTTCCAGCGATATAGCT 9154 Query 48452 TCCACTAGCTCTTAT--ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATT 48509 ||||||| || | | || || | ||| || ||||| || ||| ||||| Sbjct 9155 ATTGGTAGCTCTGATGCAGT-GTATATG-CACACCAATTCCACCGGCTGATTTCGATATC 9212 Query 48510 AGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAAT 48569 |||||||| | | ||| | | || ||||| |||||||||||| ||| || Sbjct 9213 AGAGCACAATTCGTCAAGGTGTGGAATATACCTTCGATACTATCATCTTCCATGGCCAAG 9272 Query 48570 AGAAAACAACTAGA 48583 |||||||| || || Sbjct 9273 AGAAAACAGCTGGA 9286 Score = 93.3 bits (102), Expect = 5e-14 Identities = 132/185 (71%), Gaps = 8/185 (4%) Strand=Plus/Plus Query 48608 ATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTC 48667 ||||||||| || || || ||||| |||| |||| || | || ||||| ||||| Sbjct 9370 ATTAAATAAAGTAGGGGAAGCATGTGTAAAATATTTTAGAGACATTAAATTATAAGTTTC 9429 Query 48668 AATAACAGAATCTATATC----CCATTGATGTATACCTATAGATACACGCATTAACATAT 48723 ||||| || || ||||| |||| |||| || | ||| || ||||||||||| | Sbjct 9430 AATAATCGAGTCAATATCTTCACCATGGATG----CCAACAGAGACCCGCATTAACATGT 9485 Query 48724 ATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTT 48783 ||| || | ||| |||| || || |||||||| | ||| || ||||||||||| | Sbjct 9486 GTTGGGGACGTTCGACAACACGGTCGTTGATTTTCAATAAATAGGACTTTTCCAATGTCT 9545 Query 48784 TAAAA 48788 |||| Sbjct 9546 GAAAA 9550 >seq24804 Length=9356 Score = 154 bits (170), Expect = 2e-32 Identities = 166/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 |||||||| ||||| ||||||| || || || |||||||| || |||| ||||| Sbjct 6999 TCGTCTCTTGATATCAGTTCATTACTGAAAGTCAATCCAGGCATTAGGCCTCGCTTTTTG 6940 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||| ||||| | ||||| |||||||||||| |||||||| || |||||||| || Sbjct 6939 AGCCAAAATATTGCGGCAAAACTTCCAGAAAAGAAGATACCTTCGACAGCTGCAAACGCT 6880 Query 19105 ACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCC 19164 | | |||||||||| || | || | | || | |||||||||||| |||||||| || Sbjct 6879 ATGATTCTTTCTCCAAAAGTGGCGTTTTGATCAGCAATCCATTTCAGAGCCCAATCTGCT 6820 Query 19165 TTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204 ||| | || ||||| ||||| || || |||| || |||| Sbjct 6819 TTCCTCTTGACACAAGGCATGGTTTCAATAGCGTTGAATA 6780 Score = 150 bits (166), Expect = 2e-31 Identities = 176/234 (75%), Gaps = 3/234 (1%) Strand=Plus/Minus Query 19208 ACATAC-GCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAA 19266 |||||| ||||| | ||| ||||| || | || ||||||||||| |||||||||||| Sbjct 6710 ACATACCGCTCAGTAGGATCCTTAACGTAAGTGTCGATCAATAAACTATACATTTCTGAA 6651 Query 19267 TGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACT 19326 || | ||| || |||| || ||||||||||| ||| |||| ||||| | || || ||| Sbjct 6650 TGTACATTCTCAATAGTGATTTGAAATCCGTAGAAAAATCTGGCTTCAGGAATTTGAACT 6591 Query 19327 TCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAAT 19386 || | | || | |||||| | |||||||||||| || |||||| || || |||||| Sbjct 6590 TCTTGAAAGAAACGTTCGACTAGATTTTCATTAACGATACCATCAGAGGCAGCGAAAAAT 6531 Query 19387 GCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAA-TGTATTCCAATC 19439 ||||| || ||| |||||| | ||||| || | | |||| | | | |||||| Sbjct 6530 GCTAAAACGTGTGAAATAAATTTCTTTTCTTC-GGGTTTAAGTTTCTCCCAATC 6478 >seq47140 Length=38879 Score = 129 bits (142), Expect = 7e-25 Identities = 146/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 19225 TCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCC 19284 ||||| || || | ||| |||||||| ||||||||||| ||||| | |||||| |||| Sbjct 14418 TCTTTTACGTAAGTATCGATCAATAAGCTGTACATTTCCGAATGTACATTTTCAATAGTG 14359 Query 19285 ATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCG 19344 || ||||||||||| || ||| ||||| | || ||||| || | | || | |||| Sbjct 14358 ATTTGAAATCCGTAGAAGAATCGGGCTTCAGGAATTTGTACCTCTTGAAAGAAACGTTCG 14299 Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404 || ||||| |||||||| || ||||| ||||| ||||| || ||||| || ||| Sbjct 14298 ACTAAATTCTCATTAACGATACCATCGGACGCTGCGAAAAACGCCAATACGTGCGAAATG 14239 Query 19405 AAATGTTTTTCATCTG 19420 || | ||||| |||| Sbjct 14238 AACTTCTTTTCTTCTG 14223 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| ||||| |||| | ||||| ||||||| || ||||||||||| ||||| || | Sbjct 15198 CATGACTCCACTTTTCTTGTATTCTCCAACTCTCTTCTCAAAGAAATTCGTTTTACCATT 15139 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTT 18751 || |||||| |||||||||||| ||||| |||| Sbjct 15138 CAAGGATATATTTTCCATAAAATCGAATGGGTTTT 15104 >seq28943 Length=35018 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 || |||||||| |||| |||| | |||| ||||| ||||||||||| | |||| Sbjct 13244 TGGAATTCTCCTGATAAGACTCGTCTAGTATACATATTCGAAGTATATGGTTCGAAAGAT 13303 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 || |||||||| |||||||||||||| || || |||||||| | ||| | || | | Sbjct 13304 TCGTTATTTCCTAAAATTTGAGCAGTGGAAGCAGTAGGCATAGGTGCGAGTAGAAGTGAA 13363 Query 47448 TTTCTTACTCCATATTTTTGTAT 47470 ||||| || ||||||| || ||| Sbjct 13364 TTTCTGACACCATATTGTTTTAT 13386 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| |||||||||||||| |||||| | |||||| | || | || ||||| || | Sbjct 12823 TCCAGCCATAGAAATGCATCGAAGTTAACGTCGAATAATTTGGATTTGCCATATGTATGT 12882 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | | ||| |||||| ||||| ||||| | |||||| ||||| | | | | Sbjct 12883 TTAAACTTTGCGACTGATCTATAAAAGCACCACGATCAGCAGCCATTTTAAGCACAGTTT 12942 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGA 47220 | ||| ||| |||||||| |||||||| | | ||| | || ||||||| Sbjct 12943 TCTGTTTTATTTCCCATACGGTTTTATACAACTCTTTCAAATCATCTGGGA 12993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561639038649480