Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq7785 136 3e-27 >seq7785 Length=64017 Score = 136 bits (150), Expect = 3e-27 Identities = 236/341 (69%), Gaps = 4/341 (1%) Strand=Plus/Minus Query 29874 GGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCC 29933 |||||||||||| |||||||| ||||| | ||||| || ||||| || || ||||| || Sbjct 37263 GGTGACGTGAGCGATCATGTAAGTGAGCAAGGAGTAACTAGCGATATTGAATGGTACGCC 37204 Query 29934 GAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTA 29993 | ||||| || | || | ||| || | || || || | || |||| |||| Sbjct 37203 TAAACCCATATCAGCAGAACGCTGATACATTTGGCATGACAATTCACCGTTTACTGCGTA 37144 Query 29994 AAACTGACACATGGTGTGGCACGGAGGAAGAGCCATG--AGGCCCAAGTCTTTGGGGTTC 30051 |||||| | | || || ||||| | ||||| ||| || ||| |||||| Sbjct 37143 AAACTGTACTAAGCAATGACAAGGAGGTAAGGCCATTTTAGGT--AAATCTAGAGGGTTC 37086 Query 30052 CAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTT 30111 || || || | ||| || || || |||||||| ||||| ||| || | | ||||| Sbjct 37085 CACGCACATAAGATTATTCGTCTACAGTCTGGGTTATTCCTAATGGTATCTATGACGTTT 37026 Query 30112 TGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCG 30171 || || |||||||| || | || ||| || | |||||| ||||||| |||||| Sbjct 37025 TGTAGTTGATCCACTCCTTTGTTCGTGTAATCGGTGTGCATGTCTTTGTACTCAGCTCCG 36966 Query 30172 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCC 30212 ||||| ||||| ||||| ||||| || || || || || || Sbjct 36965 AAATGTCTCCATTGGAATCCGTAAACAGGACCGAGATCACC 36925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408284650334861