Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq39894 127 2e-24 seq27679 102 6e-17 seq44468 82.4 6e-11 seq2470 82.4 6e-11 >seq39894 Length=23042 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || || |||||||| || || || ||||||||||| ||||| ||| ||||| Sbjct 12481 AGACGTAAGACCAAATGAAGAGTAGATTCCTTTTGAATATTATAATCGCTGAGAGTTCGA 12540 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| ||||| || || |||||||| |||| ||| |||||||| | |||| ||| || Sbjct 12541 CCGTCTTCCAATTGTTTTCCGGCAAAGATCAATCGTTGTTGATCAGGTGGAATGCCTTCT 12600 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| ||| |||||| | | | || |||| || || |||| || Sbjct 12601 TTGTCCTGAATTTTTGCTTTTACGTTTTCGATCGTATCGGACGGTTCGACTTCCAAAGTG 12660 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || | |||||||||||||||||||| Sbjct 12661 ATGGTTTTTCCAGTGAGCGTTTTTACAAAAATCTGCAT 12698 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || |||||||| || || ||| |||||| |||||||| |||||| | | || Sbjct 11569 AGACGTAACACCAAGTGAAGTGTGGACTCTTTCTGAATATTATAATCACTCAAGGTACGG 11628 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| ||||| || |||||||| || || | ||| || || || | || | ||| || Sbjct 11629 CCGTCTTCCAATTGTTTACCGGCGAAGATTAATCGTTGCTGGTCGGGTGGGATGCCTTCT 11688 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || || || |||||| | | | || |||| || || |||| || Sbjct 11689 TTATCTTGTATTTTCGCTTTTACGTTTTCGATCGTATCCGACGGTTCGACTTCCAAAGTG 11748 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || | ||||||||| ||||||||||| Sbjct 11749 ATGGTTTTTCCGGTGAGAGTTTTTACGAAAATCTGCAT 11786 >seq27679 Length=10833 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48577 CTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATA 48636 |||| ||||||||||| ||||| ||| | | | || ||||| ||||| || || || | Sbjct 2200 CTTTCTGAATATTGTAGTCAGACAGAGTCCTGCCATCTTCCAATTGCTTTCCAGCGAAGA 2141 Query 48637 TCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAAC 48696 ||| || || || |||| || | ||| ||||| || ||||| || |||||| Sbjct 2140 TCAAACGTTGCTGGTCCGGTGGGATGCCTTCCTTATCTTGGATCTTCTGCTTTACATTTT 2081 Query 48697 CCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAA 48756 | | || ||||| | || || || | ||||| ||||| || ||||| ||||| || | Sbjct 2080 CAATCGAATCTGAGGGTTCGACTTCGAGGGTAATAGTTTTACCAGTCAATGTTTTCACGA 2021 Query 48757 AAATCTGCATC 48767 ||||||||||| Sbjct 2020 AAATCTGCATC 2010 >seq44468 Length=9025 Score = 82.4 bits (90), Expect = 6e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 9065 TGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAA 9124 |||||| || ||| ||| || || | ||||| || || || ||||| || || | || Sbjct 6269 TGGGATGGAATATTCTTTCGCAGATAAGCTGAGCTATTCTATCGCCCTTTTTGACTAAAA 6210 Query 9125 AGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGA 9184 | || || || || || ||||| | || || ||||||||||| |||||||| || || | Sbjct 6209 AATCAGTATCTGAGTGGTTGAATAACAGTACCCCCACGTTACCTCTGTAATCTTCGTCTA 6150 Query 9185 TCACACCAGC 9194 |||| ||||| Sbjct 6149 TCACGCCAGC 6140 >seq2470 Length=523 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || || |||||||| || || |||||||||||||| ||||| ||| | || Sbjct 244 AGACGTAAGACCAAATGAAGAGTCGATTCTTTTTGAATATTATAATCGCTGAGAGTACGG 303 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || ||||| || ||||| || |||| || || ||||| | |||| ||| || Sbjct 304 CCATCTTCTAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCAGGTGGAATGCCTTCT 363 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| ||| ||| || | | | || |||| ||| || |||| || Sbjct 364 TTGTCCTGAATTTTTGCTTTAACGTTTTCGATCGTATCGGACGGCTCGACTTCCAAAGTG 423 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | |||||| || || || ||||| Sbjct 424 ATGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCAT 461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380627204543811