Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq39894 109 5e-19 seq18352 87.8 2e-12 >seq39894 Length=23042 Score = 109 bits (120), Expect = 5e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||||||||| | || || |||||||| || ||| ||||| || Sbjct 12698 ATGCAGATTTTTGTAAAAACGCTCACTGGAAAAACCATCACTTTGGAAGTCGAACCGTCC 12639 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || ||| | | | | || ||||||| || |||||||| || | || ||||| Sbjct 12638 GATACGATCGAAAACGTAAAAGCAAAAATTCAG-GACAAAGAAGGCATTCCACCTGATCA 12580 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| || | |||||||| || |||||||||||||| | |||| | ||||||||| Sbjct 12579 ACAACGATTGATCTTTGCCGGAAAACAATTGGAAGACGGTCGAACTCTCAGCGATTATAA 12520 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 |||||||| ||||||||||| || |||| ||| Sbjct 12519 TATTCAAAAGGAATCTACTCTTCATTTGGTCTTA 12486 >seq18352 Length=35742 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || || || || || || ||||| || || |||| ||||| Sbjct 19307 ATGCAAATTTTCGTGAAGACCTTGACTGGCAAAACGATCACGCTCGAAGTCGAACCCAGC 19366 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| |||||| |||||||||||| | ||| || || Sbjct 19367 GACACTATAGAAAATGTCAAGGCAAAAATTCAAGACAAAGAGGGAATTCCCCCCGACCAG 19426 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 28731 || | || || || || ||||||||| | |||||| | | ||| | | || |||| Sbjct 19427 CAACGTCTCATTTTCGCCGGCAAACAACTCGAAGATGGCCGCACACTTT--CGGACTATA 19484 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||||||||||||| ||||| ||| |||| Sbjct 19485 ACATTCAAAAAGAATCCACTCTCCACTTGGT 19515 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||||||||| |||||||| || || |||| ||||| Sbjct 19535 ATGCAAATTTTCGTGAAAACATTAACCGGTAAAACTATCACGCTCGAAGTCGAACCAAGC 19594 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | ||||| ||||| ||||| || || | || || ||| Sbjct 19595 GACACTATTGAGAACGTCAAGGCCAAAATTCAGGACAAGGAAGGTATACCACCTGACCAA 19654 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | |||||||| || || |||||| | ||||| | ||| | |||| || ||| Sbjct 19655 CAACGTCTTATCTTCGCCGGTAAACAACTCGAAGACGGAAGAACCCTTTCCGACTACAAC 19714 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 || ||||||||||| ||||| ||| |||| Sbjct 19715 ATCCAAAAAGAATCCACTCTCCACTTGGT 19743 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||| ||||| || |||||||| ||| |||| || || Sbjct 19763 ATGCAAATTTTCGTTAAAACTTTAACCGGCAAAACCATCACCCTCGAAGTTGAGCCCAGT 19822 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | ||||| |||||| || |||||||| | || || || Sbjct 19823 GACACCATCGAAAACGTCAAGGCCAAAATCCAAGATAAAGAGGGTATCCCTCCGGACCAG 19882 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | || || || || || |||||| | ||||| ||| || | ||||| ||| Sbjct 19883 CAACGTCTCATTTTCGCCGGTAAACAACTCGAAGACGGCCGAACATTGTCGGATTACAAC 19942 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||||||||| || || || ||||| | | ||||| ||||| || Sbjct 19943 ATTCAAAAAGAATCAACCCTACATTTGGTACTTCGTTTACGTGGAGGAAT 19992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425058171793803