Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq7785 134 7e-27 seq28943 95.1 6e-15 >seq7785 Length=64017 Score = 134 bits (148), Expect = 7e-27 Identities = 253/371 (68%), Gaps = 1/371 (0%) Strand=Plus/Plus Query 25928 TTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCT 25987 ||||| ||||| ||| |||||||| | || || ||||||||||| || | ||| Sbjct 8911 TTCTC-ATAAACTCATCGGGAATCCATAAAGCGTAGAATAAATCTCTTGCACGAGACTCT 8969 Query 25988 TCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCT 26047 ||||| ||| ||||||| | || || |||||||| |||||| | || ||||| |||||| Sbjct 8970 TCTTTACCGGAATTCTTTCTCAGTTCCAAGAAATCGAAAATAACCGAATGCCAAGGTTCT 9029 Query 26048 AAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTT 26107 || || || |||||| ||| |||||| || |||||||| || ||||| || || Sbjct 9030 AAGTAAATGGCAAAAGCACCCGGTCTTTTGTTGCCTCCTTGATCGACATATCTGGCTGTG 9089 Query 26108 TCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATC 26167 | |||| |||| | ||| ||||| | || | || | |||||||| | | || Sbjct 9090 TTATTGTAAACGCGGAGCATAGGAACGAGACCGTTAGATACACCGTTTGTTCCAGCGATA 9149 Query 26168 TTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAA 26227 | | || | ||| || ||| ||| | ||| |||||||| || |||| || Sbjct 9150 TAGCTATTGGTAGCTCTGATGCAGTGTATATGCACACCAATTCCACCGGCTGATTTCGAT 9209 Query 26228 ATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCT 26287 || ||||||| | | || | ||| || |||| || |||||| ||| ||| | Sbjct 9210 ATCAGAGCACAATTCGTCAAGGTGTGGAATATACCTTCGATACTATCATCTTCCATGGCC 9269 Query 26288 AATAAAAAACA 26298 || | |||||| Sbjct 9270 AAGAGAAAACA 9280 Score = 95.1 bits (104), Expect = 6e-15 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 25049 TTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTT 25108 ||||||||| | |||||||||| ||||||||||||||| ||||||| ||||| || ||| Sbjct 7792 TTTGAAGTGTACGGTTCAAAACTTTCATTATTTCCTAAAATTTGAGCGGTAGAAGCCGTT 7851 Query 25109 GGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTTTTAAT 25168 ||||| |||| ||| || ||||||| | ||| |||| | || | || ||| ||| Sbjct 7852 GGCATAGGAGCTAATAAAAGTGAATTTCGGACACCGAATTTGGCGATTTTTTCTTTCAAT 7911 >seq28943 Length=35018 Score = 95.1 bits (104), Expect = 6e-15 Identities = 103/135 (76%), Gaps = 4/135 (3%) Strand=Plus/Plus Query 25016 AATTCTCCAGACAAAACTCTTCT--TATTGATAAGTTTGAAGTGAATGGTTCAAAACATT 25073 |||||||| || || |||| ||| ||| ||| || ||||| ||||||| ||| ||| Sbjct 13247 AATTCTCCTGATAAGACTCGTCTAGTATACATA--TTCGAAGTATATGGTTCGAAAGATT 13304 Query 25074 CATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAAT 25133 | ||||||||||| ||||||| ||| || || || ||||| ||| | || || |||| Sbjct 13305 CGTTATTTCCTAAAATTTGAGCAGTGGAAGCAGTAGGCATAGGTGCGAGTAGAAGTGAAT 13364 Query 25134 TTCTCAAACCATATT 25148 |||| | |||||||| Sbjct 13365 TTCTGACACCATATT 13379 Score = 95.1 bits (104), Expect = 6e-15 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 |||||| ||| || ||||| | |||||||||||||| || ||||| |||||||| | Sbjct 14414 CATAAACTCATCCGGTATCCATAACGCATAAAATAAATCCCTAGCTCTAATTTCTTCGTG 14473 Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052 ||| ||| || || ||||||||| ||||| ||||| | |||||| ||||| | ||| Sbjct 14474 GCCGGTATTTTTACGTAAATCTAAGAAGTCAAAGATATCGGCGTGCCAAGGTTCAAGATA 14533 Query 26053 GATAGCAAAA 26062 | ||| ||| Sbjct 14534 AACAGCGAAA 14543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252833818026275