Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq18352 123 2e-23 seq39894 98.7 8e-16 seq2470 98.7 8e-16 seq18440 82.4 6e-11 >seq18352 Length=35742 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || || || ||||| || ||||| ||||| || || |||| |||||| Sbjct 20218 AATGCAGATTTTCGTGAAAACCTTGACCGGAAAAACAATCACTCTCGAGGTCGAGCCTAG 20277 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||| ||| | || || || ||| || ||||||||| | || ||||| Sbjct 20278 CGATACCATCGAAAACGTCAAGGCTAAAATTCAAGATAAAGAAGGCATTCCTCCCGATCA 20337 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| | ||||||| || || |||||||| || |||| |||||| | ||||||| || Sbjct 20338 GCAACGTCTTATTTTCGCTGGCAAACAGCTCGAAGATGGCAGAACGCTTTCGGATTATAA 20397 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAAA 110502 ||| ||||||||||||||||| || |||| || |||| || || || || Sbjct 20398 CATCCAAAAAGAATCTACGTTACATTTGGTATTGCGACTTCGCGGTGGCAA 20448 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || ||||||||||||||||||||||| ||| ||||| ||||| Sbjct 19763 ATGCAAATTTTCGTTAAAACTTTAACCGGCAAAACCATCACCCTCGAAGTTGAGCCCAGT 19822 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || || || || || ||||| || | || ||| || Sbjct 19823 GACACCATCGAAAACGTCAAGGCCAAAATCCAAGATAAAGAGGGTATCCCTCCGGACCAG 19882 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | || |||| || |||||||| || || || | | ||||| || ||||||||||| Sbjct 19883 CAACGTCTCATTTTCGCCGGTAAACAACTCGAAGACGGCCGAACATTGTCGGATTACAAC 19942 Query 110453 ATTCAAAAAGAATCTAC 110469 |||||||||||||| || Sbjct 19943 ATTCAAAAAGAATCAAC 19959 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| || || ||||||||||| |||||||| |||||| | ||| ||||| Sbjct 19990 AATGCAAATTTTCGTAAAAACTTTAACTGGCAAAACGATTACCCTGGAAGTAGAGCCCAG 20049 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || ||| | || || || || || ||||||||| | || ||| || Sbjct 20050 TGACACCATCGAAAATGTCAAGGCCAAAATCCAAGATAAAGAAGGCATACCTCCGGACCA 20109 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| | | |||| || || |||||||| || || | ||||| | | || ||||| Sbjct 20110 GCAACGTTTAATTTTCGCCGGAAAACAGCTCGAAGACGGTAGAACCCTTTCTGACTACAA 20169 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||| ||||| ||||||||| | || |||| Sbjct 20170 CATCCAAAAGGAATCTACGCTCCATTTGGT 20199 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || ||||| |||||||| ||||| || || ||||| || || | Sbjct 19535 ATGCAAATTTTCGTGAAAACATTAACCGGTAAAACTATCACGCTCGAAGTCGAACCAAGC 19594 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | || || || ||| ||||| ||||| | || || ||| Sbjct 19595 GACACTATTGAGAACGTCAAGGCCAAAATTCAGGACAAGGAAGGTATACCACCTGACCAA 19654 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | ||||| | || |||||||| || || || | ||||| | | || |||||| Sbjct 19655 CAACGTCTTATCTTCGCCGGTAAACAACTCGAAGACGGAAGAACCCTTTCCGACTACAAC 19714 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 || ||||||||||| || | ||| |||| Sbjct 19715 ATCCAAAAAGAATCCACTCTCCACTTGGT 19743 >seq39894 Length=23042 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || |||||| | |||||||| ||||| || | ||| ||||| | Sbjct 12242 ATGCAAATCTTCGTTAAAACTCTCACCGGCAAGACCATCACTTTGGAAGTCGAGCCGTCC 12183 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | || ||| || ||| |||||||||||| | || ||||| Sbjct 12182 GATACGATCGAAAACGTTAAAGCAAAAATTCAGGACAAAGAAGGCATTCCACCTGATCAG 12123 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | || | || || |||||| | || |||| | | || | ||||| || Sbjct 12122 CAAAGATTGATCTTCGCCGGAAAACAGTTAGAAGATGGCCGTACTCTCAGCGATTATAAT 12063 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||||| |||||||| | || |||| ||| | || || || |||| Sbjct 12062 ATTCAAAAGGAATCTACTCTTCATTTGGTCTTACGTCTTCGCGGTGGAA 12014 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| ||||| | || || |||||||| || | ||| || || | Sbjct 12698 ATGCAGATTTTTGTAAAAACGCTCACTGGAAAAACCATCACTTTGGAAGTCGAACCGTCC 12639 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | |||||| || ||| |||||||||||| | || |||||| Sbjct 12638 GATACGATCGAAAACGTAAAAGCAAAAATTCAGGACAAAGAAGGCATTCCACCTGATCAA 12579 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| || | || | ||| || ||||| |||| || | |||| | ||||| || Sbjct 12578 CAACGATTGATCTTTGCCGGAAAACAATTGGAAGACGGTCGAACTCTCAGCGATTATAAT 12519 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||||| |||||||| | || |||| ||| | || || || |||| Sbjct 12518 ATTCAAAAGGAATCTACTCTTCATTTGGTCTTACGTCTTCGCGGTGGAA 12470 >seq2470 Length=523 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || |||||| | |||||||| ||||| || | ||| ||||| | Sbjct 461 ATGCAAATCTTCGTTAAAACTCTCACCGGCAAGACCATCACTTTGGAAGTCGAGCCGTCC 402 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | || ||| || ||| |||||||||||| | || ||||| Sbjct 401 GATACGATCGAAAACGTTAAAGCAAAAATTCAGGACAAAGAAGGCATTCCACCTGATCAG 342 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | || | || || |||||| | || |||| | | || | ||||| || Sbjct 341 CAAAGATTGATCTTCGCCGGAAAACAGTTAGAAGATGGCCGTACTCTCAGCGATTATAAT 282 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||||||||||| || | || |||| ||| | || || || |||| Sbjct 281 ATTCAAAAAGAATCGACTCTTCATTTGGTCTTACGTCTTCGCGGTGGAA 233 >seq18440 Length=13379 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 34494 CGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTT 34553 ||||||||| | || || || | ||| ||| || |||||||| || || |||||||| Sbjct 3257 CGGACGTCCGATAGCTTTAGCAACCTCGATCATATTAACGATGACGGTTTTAATGCCGTT 3198 Query 34554 GCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGC 34613 || ||||||||||| || || | | ||||| |||||||||||||| || || Sbjct 3197 CCCTTTTCCTTCGACTTTTGCAATAAGCCTTGGCATCTTGTAGCGGTAGAAAGCATCGCT 3138 Query 34614 CACATTGCGGTTAACGTTCACAGTCCCCATCGTGGCTG 34651 || | ||||| ||||| | | | ||||| | |||| Sbjct 3137 GACGTGTCGGTTCACGTTTAAACTTCCCATGATTGCTG 3100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412505208536501