Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq18352 113 3e-20 seq39894 98.7 6e-16 seq27679 87.8 1e-12 seq2470 84.2 1e-11 >seq18352 Length=35742 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | ||| || || ||||||||||||||||| || |||| |||| Sbjct 19518 AGGACCAAGTGGAGAGTGGATTCTTTTTGAATGTTATAGTCCGAAAGTGTGCGGCCATCT 19459 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| || |||||||| || || ||||||||||| | || | ||||| ||||| Sbjct 19458 TCGAGTTGTTTGCCGGCGAAAATGAGACGTTGCTGGTCGGGGGGAATTCCCTCTTTGTCT 19399 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | |||||| ||||| | |||| | || ||| ||||| || | || || || Sbjct 19398 TGAATTTTTGCCTTGACATTTTCTATAGTGTCGCTGGGTTCGACTTCGAGCGTGATCGTT 19339 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | |||||| || || || ||||| Sbjct 19338 TTGCCAGTCAAGGTCTTCACGAAAATTTGCAT 19307 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| || |||||||| ||||| |||||| | | | || || ||||||||||||||||| Sbjct 19270 CTCTTTTTGAATGTTGTAGTCTGATAGGGTTCTACCGTCTTCGAGTTGCTTTCCGGCGAA 19211 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||| |||||||| ||| |||| | || || || || | ||||| ||| ||| Sbjct 19210 AATCAAACGTTGCTGATCTGGCGGTATACCTTCTTTATCCTGAATTTTCGCTTTAACGTT 19151 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | | || | || | | || || || | ||| || || || || || | || ||||| Sbjct 19150 TTCAATGGTGTCGCTTGGTTCAACCTCGAGGGTGATCGTTTTCCCAGTCAACGTTTTTAC 19091 Query 34966 AAAGATCTGCAT 34977 ||||||||||| Sbjct 19090 GAAGATCTGCAT 19079 >seq39894 Length=23042 Score = 98.7 bits (108), Expect = 6e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||||| ||| ||| |||||||| ||||| || | | | || | || ||| Sbjct 11578 ACCAAGTGAAGTGTGGACTCTTTCTGAATATTATAATCACTCAAGGTACGGCCGTCTTCC 11637 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 | ||| || ||||||||||| | |||||||||||| | || | || || || || | | Sbjct 11638 AATTGTTTACCGGCGAAGATTAATCGTTGCTGGTCGGGTGGGATGCCTTCTTTATCTTGT 11697 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 ||||| ||| ||| | | |||| || | ||||| || | || ||||| ||| Sbjct 11698 ATTTTCGCTTTTACGTTTTCGATCGTATCCGACGGTTCGACTTCCAAAGTGATGGTTTTT 11757 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||| || ||||| || |||||||| Sbjct 11758 CCGGTGAGAGTTTTTACGAAAATCTGCAT 11786 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||| ||||| ||||| || || | || |||| || | || |||||||||||| Sbjct 12052 TCCTTTTGAATATTATAATCGCTGAGAGTACGGCCATCTTCTAACTGTTTTCCGGCGAAG 12111 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| || |||||| || | || | || || ||||| | |||||| ||| ||| | Sbjct 12112 ATCAATCTTTGCTGATCAGGTGGAATGCCTTCTTTGTCCTGAATTTTTGCTTTAACGTTT 12171 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | |||| || | |||||| || | || |||||||| || ||||| || || || Sbjct 12172 TCGATCGTATCGGACGGCTCGACTTCCAAAGTGATGGTCTTGCCGGTGAGAGTTTTAACG 12231 Query 34967 AAGATCTGCAT 34977 ||||| ||||| Sbjct 12232 AAGATTTGCAT 12242 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 34760 AACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGC 34819 |||| |||||||| || | ||| ||||| ||||| |||||||| | | || Sbjct 12709 AACCGAAGGACCAGATGGAGGGTTGATTCCTTTTGAATATTATAGTCGCTCAACGTACGG 12768 Query 34820 TCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCC 34879 |||| |||| ||| || |||||||| || | || ||| ||||| | || | || ||| Sbjct 12769 CCATCTTCCAATTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCCGGTGGGATACCTTCC 12828 Query 34880 TTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTT 34939 || || | ||||| ||| ||| | |||| || | |||||| || | || Sbjct 12829 TTATCCTGGATTTTAGCTTTCACGTTCTCGATCGTGTCGGACGGCTCGACCTCCAAAGTG 12888 Query 34940 ATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| || ||||| || || || ||||||||||| Sbjct 12889 ATGGTCTTGCCGGTGAGAGTTTTAACGAAGATCTGCAT 12926 >seq27679 Length=10833 Score = 87.8 bits (96), Expect = 1e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 34790 TTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATC 34849 |||||||| || ||||| || || | | |||| |||| ||||||||| ||||||||| Sbjct 2198 TTCTGAATATTGTAGTCAGACAGAGTCCTGCCATCTTCCAATTGCTTTCCAGCGAAGATC 2139 Query 34850 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT 34909 | ||||||||||| | || | || ||||| || | || || || || || | | Sbjct 2138 AAACGTTGCTGGTCCGGTGGGATGCCTTCCTTATCTTGGATCTTCTGCTTTACATTTTCA 2079 Query 34910 ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAG 34969 ||||| || || ||||| || | ||| || || || || || | || || || || Sbjct 2078 ATCGAATCTGAGGGTTCGACTTCGAGGGTAATAGTTTTACCAGTCAATGTTTTCACGAAA 2019 Query 34970 ATCTGCAT 34977 |||||||| Sbjct 2018 ATCTGCAT 2011 >seq2470 Length=523 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || || ||||| ||||| || || | || |||| || | || |||||||||||| Sbjct 271 TCTTTTTGAATATTATAATCGCTGAGAGTACGGCCATCTTCTAACTGTTTTCCGGCGAAG 330 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| || |||||| || | || | || || ||||| | |||||| ||| ||| | Sbjct 331 ATCAATCTTTGCTGATCAGGTGGAATGCCTTCTTTGTCCTGAATTTTTGCTTTAACGTTT 390 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | |||| || | |||||| || | || |||||||| || ||||| || || || Sbjct 391 TCGATCGTATCGGACGGCTCGACTTCCAAAGTGATGGTCTTGCCGGTGAGAGTTTTAACG 450 Query 34967 AAGATCTGCAT 34977 ||||| ||||| Sbjct 451 AAGATTTGCAT 461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325427419094483