Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq18352 183 2e-41 seq39894 141 7e-29 seq2470 132 4e-26 seq38187 127 2e-24 seq37113 86.0 5e-12 seq62430 82.4 6e-11 >seq18352 Length=35742 Score = 183 bits (202), Expect = 2e-41 Identities = 179/228 (79%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || | ||| || ||||| || || ||||||||||||||||||||||| |||| | Sbjct 19533 CCTCCTCTGAGACGGAGGACCAAGTGGAGAGTGGATTCTTTTTGAATGTTATAGTCCGAA 19474 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| |||||||||||||| || | || | | |||||| || || ||| Sbjct 19473 AGTGTGCGGCCATCTTCGAGTTGTTTGCCGGCGAAAATGAGACGTTGCTGGTCGGGGGGA 19414 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || |||||||||||||| |||||||| |||||| |||||| |||||| |||| || Sbjct 19413 ATTCCCTCTTTGTCTTG-AATTTTTGCCTTGACATTTTCTATAGTGTCGCTGGGTTCGAC 19355 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || || || ||||||||||| ||||| || || || || ||||| Sbjct 19354 TTCGAGCGTGATCGTTTTGCCAGTCAAGGTCTTCACGAAAATTTGCAT 19307 Score = 156 bits (172), Expect = 3e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| |||||||| || |||||||| ||||| ||||| ||||| ||||| || || | Sbjct 20218 TCCTCCTCTCAAACGAAGAACCAAATGGAGCGTAGATTCCTTTTGGATGTTGTAGTCAGA 20159 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || ||| | | || ||||| ||||| || || | || || | |||||| ||||| || Sbjct 20158 AAGGGTTCTACCGTCTTCGAGCTGTTTTCCGGCGAAAATTAAACGTTGCTGGTCCGGAGG 20099 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || ||||| ||||| | ||| |||||| |||| | |||||| | ||||| Sbjct 20098 TATGCCTTCTTTATCTTGGATTTTGGCCTTGACATTTTCGATGGTGTCACTGGGCTCTAC 20039 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||| || || || |||||||||||||| ||||| || || || |||||| Sbjct 20038 TTCCAGGGTAATCGTTTTGCCAGTTAAAGTTTTTACGAAAATTTGCATT 19990 Score = 154 bits (170), Expect = 1e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG- 29617 |||||| | ||||| || |||||||| || || ||||||||||||||||| ||||||| Sbjct 19990 TCCTCCACGTAAACGAAGTACCAAATGTAGGGTTGATTCTTTTTGAATGTTGTAATCCGA 19931 Query 29618 CAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCG 29677 ||||| | || || ||||||||||| || || | || | | |||||| ||||| | Sbjct 19930 CAATGTT-CGGCCGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGCTGGTCCGGAG 19872 Query 29678 GAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 | ||||||||||| ||||| | ||| ||||| |||| | |||||| | || | Sbjct 19871 GGATACCCTCTTTATCTTGGATTTTGGCCTTGACGTTTTCGATGGTGTCACTGGGCTCAA 19812 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||| || || || |||||||| ||||| |||||||| || || ||||| Sbjct 19811 CTTCGAGGGTGATGGTTTTGCCGGTTAAAGTTTTAACGAAAATTTGCAT 19763 Score = 141 bits (156), Expect = 7e-29 Identities = 163/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||| |||||||| | ||| ||||||||||| ||||||||||||| || || | | Sbjct 20433 CGCAATACCAAATGTAACGTAGATTCTTTTTGGATGTTATAATCCGAAAGCGTTCTGCCA 20374 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||| ||||||||||| | || | | ||||||||| || ||||| || ||||| Sbjct 20373 TCTTCGAGCTGTTTGCCAGCGAAAATAAGACGTTGCTGATCGGGAGGAATGCCTTCTTTA 20314 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| |||||| | ||||| |||| | || || | | || || || ||||| || Sbjct 20313 TCTTG-AATTTTAGCCTTGACGTTTTCGATGGTATCGCTAGGCTCGACCTCGAGAGTGAT 20255 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||| || || |||||||| || || ||||||||| Sbjct 20254 TGTTTTTCCGGTCAAGGTTTTCACGAAAATCTGCATT 20218 Score = 131 bits (144), Expect = 1e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | || || || |||||||| | || || |||||||||||||| || || | Sbjct 19305 CCTCCTCGTAATCGGAGAACCAAATGTAAGGTCGACTCTTTTTGAATGTTGTAGTCTGAT 19246 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | | || |||||||| || || || | ||||| | ||||||||| ||||| Sbjct 19245 AGGGTTCTACCGTCTTCGAGTTGCTTTCCGGCGAAAATCAAACGTTGCTGATCTGGCGGT 19186 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| ||||| || || |||||| | ||| || |||| | ||||| |||| || Sbjct 19185 ATACCTTCTTTATCCTG-AATTTTCGCTTTAACGTTTTCAATGGTGTCGCTTGGTTCAAC 19127 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || ||||| ||||| || ||||| || || ||||||||||| Sbjct 19126 CTCGAGGGTGATCGTTTTCCCAGTCAACGTTTTTACGAAGATCTGCATTTT 19076 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || | ||| || ||||| || || |||||||||||||| ||||| || || | | Sbjct 19761 CCTCCTCTGAGACGGAGGACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCGGAA 19702 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | || ||||||||||| || || | || | | ||| || || || || Sbjct 19701 AGGGTTCTTCCGTCTTCGAGTTGTTTACCGGCGAAGATAAGACGTTGTTGGTCAGGTGGT 19642 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| || ||||| || |||||| | ||||| | || | |||||| |||| || Sbjct 19641 ATACCTTCCTTGTCCTG-AATTTTGGCCTTGACGTTCTCAATAGTGTCGCTTGGTTCGAC 19583 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || || |||||||| || ||||| ||||| || || || ||||| Sbjct 19582 TTCGAGCGTGATAGTTTTACCGGTTAATGTTTTCACGAAAATTTGCAT 19535 >seq39894 Length=23042 Score = 141 bits (156), Expect = 7e-29 Identities = 159/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 ||||||||||| || ||||| |||||||| |||||||| | || ||| || || Sbjct 12490 ACCAAATGAAGAGTAGATTCCTTTTGAATATTATAATCGCTGAGAGTTCGACCGTCTTCC 12549 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | |||||| || ||| | ||||||| ||| ||||| || ||||| || |||||||| || Sbjct 12550 AATTGTTTTCCGGCAAAGATCAATCGTTGTTGATCAGGTGGAATGCCTTCTTTGTCCTG- 12608 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 |||||||| ||| || |||| | || || || |||| ||||| | ||| || ||||| Sbjct 12609 AATTTTTGCTTTTACGTTTTCGATCGTATCGGACGGTTCGACTTCCAAAGTGATGGTTTT 12668 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| | ||||| ||||| |||||||| Sbjct 12669 TCCAGTGAGCGTTTTTACAAAAATCTGCAT 12698 Score = 129 bits (142), Expect = 5e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 ||||||||||| || ||||| |||||||| |||||||| | || || ||| || Sbjct 12034 ACCAAATGAAGAGTAGATTCCTTTTGAATATTATAATCGCTGAGAGTACGGCCATCTTCT 12093 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | ||||| || || | ||||||||||||||||| || ||||| || |||||||| || Sbjct 12094 AACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCAGGTGGAATGCCTTCTTTGTCCTG- 12152 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 |||||||| ||| || |||| | || || || | || ||||| | ||| || || || Sbjct 12153 AATTTTTGCTTTAACGTTTTCGATCGTATCGGACGGCTCGACTTCCAAAGTGATGGTCTT 12212 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || | |||||||| || || ||||| Sbjct 12213 GCCGGTGAGAGTTTTAACGAAGATTTGCAT 12242 >seq2470 Length=523 Score = 132 bits (146), Expect = 4e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 ||||||||||| || |||||||||||||| |||||||| | || || ||| || Sbjct 253 ACCAAATGAAGAGTCGATTCTTTTTGAATATTATAATCGCTGAGAGTACGGCCATCTTCT 312 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | ||||| || || | ||||||||||||||||| || ||||| || |||||||| || Sbjct 313 AACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCAGGTGGAATGCCTTCTTTGTCCTG- 371 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 |||||||| ||| || |||| | || || || | || ||||| | ||| || || || Sbjct 372 AATTTTTGCTTTAACGTTTTCGATCGTATCGGACGGCTCGACTTCCAAAGTGATGGTCTT 431 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || | |||||||| || || ||||| Sbjct 432 GCCGGTGAGAGTTTTAACGAAGATTTGCAT 461 >seq38187 Length=9425 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAG 29629 ||| | |||||||||||| |||||||||||||||||||||||||| | ||| ||| || Sbjct 3201 ACGTAACACCAAATGAAGTGTGGATTCTTTTTGAATGTTATAATCGCTCAA-GGTACGGC 3143 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 || | | |||||| || || | || |||| ||| |||||||| || ||||| |||| Sbjct 3142 CGTCTTTCAATTGTTTACCGGCGAAGATTAATCGTTGTTGATCCGGTGGGATACCTTCTT 3083 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 | || |||| ||| ||||| |||| | ||| || | | || |||| | || | Sbjct 3082 TATCCTGTATTTTAGCCTTGACGTTTTCAATAGTATCGCATGGCTCGACTTTCAATGTGA 3023 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||| || |||| |||||||| || || ||||| Sbjct 3022 TTGTTTTACCGGTTAGCGTTTTAACGAAAATTTGCAT 2986 >seq37113 Length=2419 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| | || || ||||| | || ||||||||||| ||||| ||||| | | Sbjct 656 CCACCTCTCAATCTCAATACTAAATGCAAAGTCGATTCTTTTTGGATGTTGTAATCGGAA 715 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| ||||||||||| || || | ||||| | ||||||||| || ||| Sbjct 716 AGGGTACGTCCATCTTCGAGTTGTTTACCGGCGAAAATCAAACGTTGCTGATCAGGAGGA 775 Query 29680 ATACC 29684 || || Sbjct 776 ATGCC 780 >seq62430 Length=23789 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || || || | || ||||| | ||| ||||||||||| || || ||||| | | Sbjct 14419 CCACCTCTTAATCGTAATACTAAATGCAACGTAGATTCTTTTTGGATATTGTAATCGGAA 14360 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| ||||||||||| ||||| | ||||| | ||| ||||| || ||| Sbjct 14359 AGAGTTCGTCCATCTTCGAGTTGTTTACCAGCGAAAATCAAACGTTGTTGATCAGGAGGA 14300 Query 29680 ATACC 29684 ||||| Sbjct 14299 ATACC 14295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384905315811837