Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq25725 98.7 1e-15 seq63063 95.1 2e-14 seq27188 93.3 5e-14 >seq25725 Length=9665 Score = 98.7 bits (108), Expect = 1e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 23055 CATGGGGATGAATATAATTTTGATGGTCCAGGTCAAATTTTAGCTCATGCtttttttCCT 23114 ||||| |||| || | || ||||| | |||| || | ||||||||||||||||| || Sbjct 3586 CATGGAGATGGATTTTCATTCGATGGGCAAGGTAAAGTCTTAGCTCATGCTTTTTTCCCC 3645 Query 23115 GGTACTGGAAGAGGAGGAGATGCTCATTTTGATTTAGAAGAAAACTGGA 23163 ||| | ||||||||||| ||||| ||||||||||| || ||| | |||| Sbjct 3646 GGTTCGGGAAGAGGAGGCGATGCCCATTTTGATTTGGACGAAGAATGGA 3694 >seq63063 Length=7198 Score = 95.1 bits (104), Expect = 2e-14 Identities = 171/243 (70%), Gaps = 13/243 (5%) Strand=Plus/Plus Query 192880 CTATGGTTAAACAAGCCATTGGATT---TATTCCG---TGTCACAACTTAAAAACGGAAA 192933 |||||| ||||||||||| ||| | |||| | | |||| | | || ||| | Sbjct 930 CTATGGGCAAACAAGCCATGGGAGTGTATATTACAAACTTTCACGTC---AGAATGGACA 986 Query 192934 CAGTATCTCATACATTAAATTATCCACAAAAACCCCTTGTTACCACA-GATAT-TGCAAA 192991 | || | ||| ||| |||||||||| ||||| || || ||||| ||| || || Sbjct 987 CCTTAGCGCATGTGTTATATTATCCACAGAAACCTCTAGTCACCACTCGATCGATGGAAT 1046 Query 192992 ATTTAATAAATTAGACGATTATCCAAATGGTATTAATGCTATTGTTGCTATAGCTTGCTA 193051 |||| ||||| |||| ||| ||| ||||||||||| || ||||| || || Sbjct 1047 ATTTGCGTT-TTAGA-GATTTACCAGCTGGAATTAATGCTATCGTGGCTATTTTATGTTA 1104 Query 193052 TACTGGTTATAATCAAGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAAAGAGGATT 193111 | |||| |||||||||||||| ||| ||||||| ||| || || | ||||||||||| Sbjct 1105 TTCTGGGTATAATCAAGAAGATAGTGTTATTTTGAATGCTTCTGCTGTGGAAAGAGGATT 1164 Query 193112 ATT 193114 || Sbjct 1165 TTT 1167 >seq27188 Length=4830 Score = 93.3 bits (102), Expect = 5e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 2322 TTTAAATCAAAGACAATTAGCATACAAAATATCTGCAAATTCTATGTATGGTATTACAGG 2381 |||| | || | |||||| | || ||||| | ||| ||||| ||||||||| | || Sbjct 225 TTTAGAAAAACGGCAATTATCTTATAAAATTTGTGCTAATTCAATGTATGGTGCCATGGG 284 Query 2382 TGTTAAAGCTGGAATGTTACCTTTTATGCCTGTTGCTATGTCTATAACTTATAAAGGTCG 2441 ||||||| | || |||||||||||||||| |||| |||| | | || |||||||| || Sbjct 285 TGTTAAATCCGGTGCGTTACCTTTTATGCCTCTTGCAATGTGTGTCACATATAAAGGACG 344 Query 2442 TGAAGGTGTTAAACAGGTATCAGATATTTTACAAAAACAATATGGTGGAGAACTAGTGTA 2501 || || || || | | | | |||||| ||| ||| | ||| || || | || Sbjct 345 AGAGAGTATTCAAAAAGCGGCGCAAATTTTAAAAACCGAATTGGAAGGAAAAATAATTTA 404 Query 2502 CGGAGACACGGATT 2515 ||| || || |||| Sbjct 405 CGGCGATACAGATT 418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634646774139960