Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq25725 107 2e-18 seq27188 98.7 1e-15 seq63063 87.8 2e-12 >seq25725 Length=9665 Score = 107 bits (118), Expect = 2e-18 Identities = 89/109 (82%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 22384 CACGGAGATGGATATAATTTTGATGGTCCAGGTCAAATTTTAGCTCATGCTTTTTTCCCT 22443 || |||||||||| | || ||||| | |||| || | |||||||||||||||||||| Sbjct 3586 CATGGAGATGGATTTTCATTCGATGGGCAAGGTAAAGTCTTAGCTCATGCTTTTTTCCCC 3645 Query 22444 GGTACTGGAAGAGGAGGAGATGCTCATTTTGATTTAGAAGAAAATTGGA 22492 ||| | ||||||||||| ||||| ||||||||||| || ||| | |||| Sbjct 3646 GGTTCGGGAAGAGGAGGCGATGCCCATTTTGATTTGGACGAAGAATGGA 3694 >seq27188 Length=4830 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 2322 TTTAAATCAAAGACAATTAGCATACAAAATATCTGCAAATTCTATGTATGGTATTACAGG 2381 |||| | || | |||||| | || ||||| | ||| ||||| ||||||||| | || Sbjct 225 TTTAGAAAAACGGCAATTATCTTATAAAATTTGTGCTAATTCAATGTATGGTGCCATGGG 284 Query 2382 TGTTAAAGCTGGAATGTTACCTTTTATGCCTGTTGCTATGTCTATAACTTATAAAGGTCG 2441 ||||||| | || |||||||||||||||| |||| |||| | | || |||||||| || Sbjct 285 TGTTAAATCCGGTGCGTTACCTTTTATGCCTCTTGCAATGTGTGTCACATATAAAGGACG 344 Query 2442 TGAAGGTGTTAAACAAGTATCAGATATTTTGCAAAAAC--AATATGGTGGAGAACTAGTG 2499 || || || || ||| | | ||||| |||||| ||| | ||| || || | Sbjct 345 AGAGAGTATTCAAAAAGCGGCGCAAATTTT--AAAAACCGAATTGGAAGGAAAAATAATT 402 Query 2500 TATGGAGACACGGACTCTAATTATGTT 2526 || || || || || || ||||| ||| Sbjct 403 TACGGCGATACAGATTCCAATTACGTT 429 >seq63063 Length=7198 Score = 87.8 bits (96), Expect = 2e-12 Identities = 124/169 (73%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 192501 TTAAATTATCCACAAAAACCACTTGTTACCACA-GATAT-TGCAAAATTTAATAAATTAG 192558 ||| |||||||||| ||||| || || ||||| ||| || || |||| |||| Sbjct 1001 TTATATTATCCACAGAAACCTCTAGTCACCACTCGATCGATGGAATATTTGCGTT-TTAG 1059 Query 192559 ACGATTATCCAAATGGTATTAATGCTATTGTTGCTATAGCTTGCTATACTGGCTATAACC 192618 | |||| ||| ||| ||||||||||| || ||||| || ||| |||| ||||| | Sbjct 1060 A-GATTTACCAGCTGGAATTAATGCTATCGTGGCTATTTTATGTTATTCTGGGTATAATC 1118 Query 192619 AAGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAAAGAGGATTATT 192667 ||||||| ||| ||||||| ||| || || | ||||||||||| || Sbjct 1119 AAGAAGATAGTGTTATTTTGAATGCTTCTGCTGTGGAAAGAGGATTTTT 1167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628005928619520