Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq33840 98.7 2e-15 seq26624 96.9 6e-15 seq39894 86.0 1e-11 seq43973 84.2 4e-11 >seq33840 Length=18965 Score = 98.7 bits (108), Expect = 2e-15 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 143094 GGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATATAAATAAACCTCTT 143153 ||| | |||||||||||||| || ||| || |||| |||||||||| |||||| || Sbjct 12922 GGTCTTTGCGATAATTTACTGACGACTACGCTACGAGCTTGGGATATAAGCAAACCT-TT 12980 Query 143154 ATT-TTTTGTCCCGCTATGAATAGCCTTATGTGGGAACATCCTATTACAGAAAAACATAT 143212 ||| ||||| || || ||||||| |||||||| |||||||| |||| | ||| | Sbjct 12981 ATTATTTTGCCCTGCCATGAATACTAGAATGTGGGATCATCCTATAACAGCATCACAAGT 13040 Query 143213 AGATGC-TTTAAAACATATGGGTTTCATAGAAATAGAATGCATAGaaaaaaaaCTAGCCT 143271 | | || |||||| | ||||| |||||||| ||| || | |||| || | Sbjct 13041 A-ACGCAATTAAAATCTTGGGGTTATATAGAAATTCCATGTATCGCGAAAACTTTAATGT 13099 Query 143272 GCGGAGACATAGGAAATGGTGCTATGGCAGAA 143303 || ||| |||||| ||||| ||||| ||| Sbjct 13100 GCAAAGATGTAGGAATGGGTGCAATGGCCGAA 13131 >seq26624 Length=38659 Score = 96.9 bits (106), Expect = 6e-15 Identities = 206/305 (68%), Gaps = 2/305 (1%) Strand=Plus/Minus Query 58369 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGT 58428 |||||| | ||| | |||||||||||| | || ||| |||||| || ||||| | Sbjct 37748 GATAGCAAATGCAGTTTGGTGGTACTATTTTTCAAAATTACTAGAATTCTGCGATACCTT 37689 Query 58429 GTTTTTCATACTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTT 58488 || ||||| | |||||||| ||| || | | ||| ||||||| |||||||||| Sbjct 37688 CTTCTTCATTTTAAGGAAAAAAGATAAACAACTCACATTTTTACACGTGTATCATCATTC 37629 Query 58489 TACTATGTTTACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGG-TCAGGCATTTT 58547 || || || | || | ||| | ||||| |||| | || | || ||| |||||| Sbjct 37628 CACCATTTTCTCCTTGTGGTGGATTGGTATAAAATACGTACCAAGTGGCTCA-ACATTTT 37570 Query 58548 TCGGCGCTCAGTTGAATTCTTTTATCCATGTTATTATGTATAGTTATTATGGTATGGCGG 58607 || || | ||||| | || |||||| | ||||| | |||||| ||| | || | Sbjct 37569 TCCCTGCGATGGTGAATAGCTCAATTCATGTTCTCATGTACACTTATTACGGTTTAGCAG 37510 Query 58608 CGTGTGGACATATGTTTAAAAAGTATTTATGGTGGAAGCGTTACCTTACTATAATGCAAT 58667 | |||| | || || |||||||||||||| ||| | ||||| | |||| Sbjct 37509 CAATGGGACCGACAATTGCGAAATATTTATGGTGGAAAAAATACTTGACTATGCTCCAAT 37450 Query 58668 TGGTA 58672 ||||| Sbjct 37449 TGGTA 37445 >seq39894 Length=23042 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/139 (73%), Gaps = 11/139 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 |||||| ||||||| || ||||||||||| ||||||| || |||||| || Sbjct 12499 AGAGTAGATTCCTTTTGAATATTATAATCGCTGAGAGTTCGACCGTCTTCCAATTGTTTT 12558 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 ||||||| | || ||||||| | || | || |||| || || ||||| |||||| Sbjct 12559 CCGGCAAAGATCAATCGTTGTTGATCAGGTGGAATGCCTTCTTTGTCCTGAATTTTTGCT 12618 Query 81753 TTTATATTTTCAATCGTAT 81771 |||| ||||| ||||||| Sbjct 12619 TTTACGTTTTCGATCGTAT 12637 >seq43973 Length=24807 Score = 84.2 bits (92), Expect = 4e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 82042 ACATGGTGTTTATATTTATGTAGAGCTTGTCTAGCTTTAGGTATTAATATAGTTTTATCC 82101 |||||||| |||||||||| || ||| | ||| |||||| |||| |||| | ||| ||| Sbjct 14569 ACATGGTGATTATATTTATCTAAAGCATATCTGGCTTTACGTATCAATAAATTTTCATCG 14510 Query 82102 GTTTCTAATTTGAATGATACTACAAAAGCATTTGGA 82137 ||||||||||| || |||| || || || || ||| Sbjct 14509 GTTTCTAATTTAAAAGATATTATGAACGCTTTGGGA 14474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902656207967520