Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq18352 132 5e-26 seq39894 105 6e-18 seq27679 96.9 3e-15 seq2470 87.8 2e-12 >seq18352 Length=35742 Score = 132 bits (146), Expect = 5e-26 Identities = 155/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATC-GCCCATCGTGGACGAGTCCTCGAG 133513 ||||||| ||| || ||||| || || |||||||| | | || | | | ||| ||||| Sbjct 19968 AAATGTAGGGTTGATTCTTTTTGAATGTTGTAATCCGACAATGTTCGGCC-GTCTTCGAG 19910 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || ||| ||||||| || |||||||| |||||||| || || || || ||| Sbjct 19909 TTGTTTACCGGCGAAAATGAGACGTTGCTGGTCCGGAGGGATACCCTCTTTATCTTGGAT 19850 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 || ||||| | || | ||||| ||||||| || |||| ||||| ||||||||| Sbjct 19849 TTTGGCCTTGACGTTTTCGATGGTGTCACTGGGCTCAACTTCGAGGGTGATGGTTTTGCC 19790 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| | |||||| |||||||| ||||| Sbjct 19789 GGTTAAAGTTTTAACGAAAATTTGCAT 19763 Score = 109 bits (120), Expect = 5e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||||| || || ||||| || || || ||||| | ||| || |||||| Sbjct 20424 AAATGTAACGTAGATTCTTTTTGGATGTTATAATCCGAAAGCGTTCTGCCATCTTCGAGC 20365 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || ||||| ||| |||| || || ||||| |||||||| |||||||| || || ||| Sbjct 20364 TGTTTGCCAGCGAAAATAAGACGTTGCTGATCGGGAGGAATGCCTTCTTTATCT-TGAAT 20306 Query 133575 TTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| || |||| | || | || ||| | ||||| || |||| |||| ||||| || Sbjct 20305 TTTAGCCTTGACGTTTTCGATGGTATCGCTAGGCTCGACCTCGAGAGTGATTGTTTTTCC 20246 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| ||||| |||||||||||||| Sbjct 20245 GGTCAAGGTTTTCACGAAAATCTGCAT 20219 Score = 104 bits (114), Expect = 2e-17 Identities = 151/209 (72%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 ||||||| ||| |||||||| || || ||||| || || | | | | ||| |||| Sbjct 19284 AAATGTAAGGTCGACTCTTTTTGAATGTTGTAGTCTG--ATAGGGTTCTACCGTCTTCGA 19227 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 | ||||| || ||| |||| | || ||||| || || || || ||||| || || ||| Sbjct 19226 GTTGCTTTCCGGCGAAAATCAAACGTTGCTGATCTGGCGGTATACCTTCTTTATCC-TGA 19168 Query 133573 TCTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 ||| |||| | | | |||| |||||| | || || || |||| ||||| ||||| Sbjct 19167 ATTTTCGCTTTAACGTTTTCAATGGTGTCGCTTGGTTCAACCTCGAGGGTGATCGTTTTC 19108 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || |||| ||||||||||| |||||||| Sbjct 19107 CCAGTCAACGTTTTTACGAAGATCTGCAT 19079 Score = 104 bits (114), Expect = 2e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || ||||| || ||||| ||| ||||||| || ||||||||||| || || || || ||| Sbjct 19461 TCTTCGAGTTGTTTGCCGGCGAAAATGAGACGTTGCTGGTCGGGGGGAATTCCCTCTTTG 19402 Query 133566 TCGGTGATCTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 || ||| ||||| ||||| | || | |||||| |||| || || |||| |||| Sbjct 19401 TC-TTGAATTTTTGCCTTGACATTTTCTATAGTGTCGCTGGGTTCGACTTCGAGCGTGAT 19343 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||||| |||| || || |||||||| ||||| Sbjct 19342 CGTTTTGCCAGTCAAGGTCTTCACGAAAATTTGCAT 19307 Score = 102 bits (112), Expect = 8e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| |||||||| || || ||| |||| | || |||||||| ||||| |||||||| || Sbjct 20146 GTCTTCGAGCTGTTTTCCGGCGAAAATTAAACGTTGCTGGTCCGGAGGTATGCCTTCTTT 20087 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 || ||| || ||||| | || | ||||| ||||||| || || | ||| | Sbjct 20086 ATCTTGGATTTTGGCCTTGACATTTTCGATGGTGTCACTGGGCTCTACTTCCAGGGTAAT 20027 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||||| || | ||||||||||||||| ||||| Sbjct 20026 CGTTTTGCCAGTTAAAGTTTTTACGAAAATTTGCAT 19991 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 ||||| ||||| || || ||||| ||| | || ||| ||||| || || || Sbjct 19731 GTGGATTCTTTTTGGATGTTGTAGTCGGAAAGGGTTCTTCCGTCTTCGAGTTGTTTACCG 19672 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-CTT 133582 ||| | || || || || ||||| || || || ||||||||||| ||| ||| | ||| Sbjct 19671 GCGAAGATAAGACGTTGTTGGTCAGGTGGTATACCTTCCTTGTC-CTGAATTTTGGCCTT 19613 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| |||||| | || || || |||| |||| ||||| ||||| | || Sbjct 19612 GACGTTCTCAATAGTGTCGCTTGGTTCGACTTCGAGCGTGATAGTTTTACCGGTTAATGT 19553 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| |||||||| ||||| Sbjct 19552 TTTCACGAAAATTTGCAT 19535 >seq39894 Length=23042 Score = 105 bits (116), Expect = 6e-18 Identities = 146/200 (73%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACG--AGTCCTCGAGCTGCTTGC 133521 |||||||||||||| ||||| ||||| | || || ||| ||| || | || || | Sbjct 11590 GTGGACTCTTTCTGAATATTATAATCACTCAAGGT--ACGGCCGTCTTCCAATTGTTTAC 11647 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC- 133580 | ||| | || | || ||||||||||| ||||||||||| || || || ||| || Sbjct 11648 CGGCGAAGATTAATCGTTGCTGGTCGGGTGGGATGCCTTCTTTATC-TTGTATTTTCGCT 11706 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | || | ||| || | || || || || | |||| |||||| ||||| ||| Sbjct 11707 TTTACGTTTTCGATCGTATCCGACGGTTCGACTTCCAAAGTGATGGTTTTTCCGGTGAGA 11766 Query 133641 GTTTTTACGAAAATCTGCAT 133660 |||||||||||||||||||| Sbjct 11767 GTTTTTACGAAAATCTGCAT 11786 Score = 104 bits (114), Expect = 2e-17 Identities = 150/207 (72%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGC 133514 ||| | ||| || || || || ||||| || |||| | ||| |||| ||||| ||| Sbjct 12267 ATGGAGGGTTGATTCCTTTTGGATATTATAGTCGCTGA--GTGTACGACCATCCTCAAGC 12324 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || || || ||| |||| | || || |||||||| ||||| |||||||| || ||| Sbjct 12325 TGTTTACCGGCGAAAATCAATCGTTGTTGGTCGGGTGGGATACCTTCCTTATCT-TGAAT 12383 Query 133575 TTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| |||| | | ||||| |||||||| || || || || | || | ||||| || Sbjct 12384 TTTGGCTTTCACGTTCTCAATCGTGTCGGATGGTTCGACTTCTAACGTAATCGTTTTTCC 12443 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| |||||||||||||| ||||| Sbjct 12444 TGTCAATGTTTTTACGAAAATTTGCAT 12470 >seq27679 Length=10833 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| | || | || |||||||| || |||||||||||||| || |||| Sbjct 2156 TGCTTTCCAGCGAAGATCAAACGTTGCTGGTCCGGTGGGATGCCTTCCTTATCTTGGATC 2097 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | | |||| || || | ||| || || |||| ||| | ||||| || Sbjct 2096 TTCTGCTTTACATTTTCAATCGAATCTGAGGGTTCGACTTCGAGGGTAATAGTTTTACCA 2037 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| ||||| |||||||||||||| Sbjct 2036 GTCAATGTTTTCACGAAAATCTGCAT 2011 >seq2470 Length=523 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| || || || || ||||| || |||| || || | | | || || | | Sbjct 30 ATGGAGGGTTGATTCCTTTTGGATATTATAGTCGCTCAATGTACGGCCA-TCTTCCAATT 88 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 | ||||| ||| |||| | | || ||||| || ||||| |||||||| || ||| | Sbjct 89 GTTTGCCGGCGAAAATTAATCTTTGTTGGTCCGGTGGGATACCTTCCTTATCT-TGAATT 147 Query 133576 TTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || |||| | | |||| |||||||| || ||||| || | || | ||||| ||| Sbjct 148 TTGGCTTTCACATTTTCAATCGTGTCGGATGGTTCCACTTCCAATGTAATAGTTTTTCCG 207 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || || |||||||||||||| ||||| Sbjct 208 GTGAGCGTTTTTACGAAAATTTGCAT 233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483016799194680