Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq28943 91.5 3e-13 seq23989 84.2 5e-11 >seq28943 Length=35018 Score = 91.5 bits (100), Expect = 3e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 110757 TTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAA 110816 || ||| | ||||| ||||||||||| | ||||| ||||| |||||||| | |||||| Sbjct 14542 TTCGCTGTTTATCTTGAACCTTGGCACGCCGATATCTTTGACTTCTTAGATTTACGTAAA 14483 Query 110817 AATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGAT 110876 ||| || |||||| ||||| | |||||||||||||| | ||||| | ||| Sbjct 14482 AATACCGGCCACGAAGAAATTAGAGCTAGGGATTTATTTTATGCGTTATGGATACCGGAT 14423 Query 110877 TTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCT 110936 || ||| ||||| || || | | | ||| ||||||||| ||| || | | Sbjct 14422 GAGTTTATGCGGCGTGTAGAAAAAGAAGAAAAATGGAGTCTTATGTGCCCTAGTCAATGT 14363 Query 110937 CCTGGTCT 110944 |||||||| Sbjct 14362 CCTGGTCT 14355 >seq23989 Length=11823 Score = 84.2 bits (92), Expect = 5e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 304986 TTAAAGGTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTG 305045 ||||||||||||| || | |||||||||||| | |||||||||||||| |||||| | Sbjct 9602 TTAAAGGTAAAGAAGGCAGAATTCGAGGTAATTTGATGGGAAAACGTGTGGATTTTTCGG 9543 Query 305046 CAAGAAGTGTAATCACACCTGATTCT 305071 | | | |||||||||||| ||| || Sbjct 9542 CTCGTACTGTAATCACACCGGATCCT 9517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1185796169850577