Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq18352 172 4e-38 seq39894 136 3e-27 seq37113 104 2e-17 seq2470 104 2e-17 seq38187 102 5e-17 seq62430 87.8 1e-12 >seq18352 Length=35742 Score = 172 bits (190), Expect = 4e-38 Identities = 177/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| |||| || || | |||||||||| || ||||||||| |||||||| || || Sbjct 19306 ACCTCCTCGTAATCGGAGAACCAAATGTAAGGTCGACTCTTTTTGAATGTTGTAGTCTGA 19247 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | |||| || | ||| |||||||| ||||||||||| ||||||||| |||| Sbjct 19246 TAGGGTTCTACCGTCTTCGAGTTGCTTTCCGGCGAAAATCAAACGTTGCTGATCTGGCGG 19187 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | ||||||||| || ||||||| ||| ||| | ||| ||||||||||| ||| | Sbjct 19186 TATACCTTCTTTATCCTGAATTTTCGCTTT-AACGTTTTCAATGGTGTCGCTTGGTTCAA 19128 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||||||||| || || ||||||||||| ||||||||||| Sbjct 19127 CCTCGAGGGTGATCGTTTTCCCAGTCAACGTTTTTACGAAGATCTGCAT 19079 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||| | ||| | ||||| || |||||| |||||||| ||||| || || || Sbjct 19534 ACCTCCTCTGAGACGGAGGACCAAGTGGAGAGTGGATTCTTTTTGAATGTTATAGTCCGA 19475 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || || | |||||| ||||| ||||| | ||| ||||| || | || Sbjct 19474 AAGTGTGCGGCCATCTTCGAGTTGTTTGCCGGCGAAAATGAGACGTTGCTGGTCGGGGGG 19415 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || |||||||| |||||| || | |||| || | |||||||| | ||| | Sbjct 19414 AATTCCCTCTTTGTCTTGAATTTT-TGCCTTGACATTTTCTATAGTGTCGCTGGGTTCGA 19356 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | |||||||||||| || || || || || || || || |||||| Sbjct 19355 CTTCGAGCGTGATCGTTTTGCCAGTCAAGGTCTTCACGAAAATTTGCATA 19306 Score = 113 bits (124), Expect = 3e-20 Identities = 171/240 (71%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || || ||||||||||| | |||||||| || || || ||||| ||| Sbjct 20229 AAAATCTGCATTCCTCCTCTCAAACGAAGAACCAAATGGAGCGTAGATTCCTTTTGGATG 20170 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 ||||| || || || || | |||| || | ||||||||||| ||||| ||||| ||| Sbjct 20169 TTGTAGTCAGAAAGGGTTCTACCGTCTTCGAGCTGTTTTCCGGCGAAAATTAAACGTTGC 20110 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 || || | || | |||||||| || ||||| | | |||| || | |||||| Sbjct 20109 TGGTCCGGAGGTATGCCTTCTTTATCTTGGATTTT-GGCCTTGACATTTTCGATGGTGTC 20051 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || || | || |||||||| || ||||| |||||||| || || ||||| Sbjct 20050 ACTGGGCTCTACTTCCAGGGTAATCGTTTTGCCAGTTAAAGTTTTTACGAAAATTTGCAT 19991 Score = 105 bits (116), Expect = 4e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 33532 AAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGT 33591 ||||| | ||||||||||| || |||||||| ||||||||||| || | ||| || Sbjct 19980 AAACGAAGTACCAAATGTAGGGTTGATTCTTTTTGAATGTTGTAATCCGACAATGTTCGG 19921 Query 33592 TCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCT 33651 |||| || | |||||| ||||| ||||| | ||| ||||| || | || | ||| ||| Sbjct 19920 CCGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGCTGGTCCGGAGGGATACCCTCT 19861 Query 33652 TTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGT 33710 || || ||||| | | || | || | |||||| || | || || || | || Sbjct 19860 TTATCTTGGATTTT-GGCCTTGACGTTTTCGATGGTGTCACTGGGCTCAACTTCGAGGGT 19802 Query 33711 GATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||| ||||| || ||||| ||||| || || || |||||| Sbjct 19801 GATGGTTTTGCCGGTTAAAGTTTTAACGAAAATTTGCATA 19762 >seq39894 Length=23042 Score = 136 bits (150), Expect = 3e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | |||||| |||||||| ||||| || ||||| || || |||||| | Sbjct 12472 CCACCGCGAAGACGTAAGACCAAATGAAGAGTAGATTCCTTTTGAATATTATAATCGCTG 12531 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| |||||||||||||||||||| ||||| || || ||||| | || Sbjct 12532 AGAGTTCGACCGTCTTCCAATTGTTTTCCGGCAAAGATCAATCGTTGTTGATCAGGTGGA 12591 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| |||||| || || || | || | || ||| | ||| || Sbjct 12592 ATGCCTTCTTTGTCCTGAATTTT-TGCTTTTACGTTTTCGATCGTATCGGACGGTTCGAC 12650 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| ||||| || || | |||||||||||| ||||||||| Sbjct 12651 TTCCAAAGTGATGGTTTTTCCAGTGAGCGTTTTTACAAAAATCTGCATA 12699 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | |||||| |||||||| ||||| || ||||| || || |||||| | Sbjct 12016 CCACCGCGAAGACGTAAGACCAAATGAAGAGTAGATTCCTTTTGAATATTATAATCGCTG 12075 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || || ||||||||||| || ||||| | |||||||| | || Sbjct 12076 AGAGTACGGCCATCTTCTAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCAGGTGGA 12135 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| |||||| || || ||| | || | || ||| | || || Sbjct 12136 ATGCCTTCTTTGTCCTGAATTTT-TGCTTTAACGTTTTCGATCGTATCGGACGGCTCGAC 12194 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || || | ||||| || ||||| |||||| Sbjct 12195 TTCCAAAGTGATGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCATA 12243 Score = 95.1 bits (104), Expect = 8e-15 Identities = 166/239 (69%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 33513 AAAATCGTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTT 33572 ||| | || |||||| | | |||||||||||| || || ||| |||||| || || || Sbjct 11550 AAATTAGTAACCACCACGAAGACGTAACACCAAGTGAAGTGTGGACTCTTTCTGAATATT 11609 Query 33573 GTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTG 33632 ||||| | || || |||| ||||||||||| ||||| || || || || ||||| Sbjct 11610 ATAATCACTCAAGGTACGGCCGTCTTCCAATTGTTTACCGGCGAAGATTAATCGTTGCTG 11669 Query 33633 ATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGC 33691 || | || | |||||||| || |||||| | || || | || | || || Sbjct 11670 GTCGGGTGGGATGCCTTCTTTATCTTGTATTTTC-GCTTTTACGTTTTCGATCGTATCCG 11728 Query 33692 TTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | ||| || || | ||||| ||||| || || | |||||||| || ||||||||| Sbjct 11729 ACGGTTCGACTTCCAAAGTGATGGTTTTTCCGGTGAGAGTTTTTACGAAAATCTGCATA 11787 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || || | |||| ||| || || || ||||| || || || ||| Sbjct 11787 ACCACCACGTAACCGAAGGACCAGATGGAGGGTTGATTCCTTTTGGATATTATAGTCGCT 11846 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| || | || ||||||||||| ||||| ||||| || | || || || | || Sbjct 11847 CAATGTACGGCCATCTTCCAATTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCCGGTGG 11906 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| || || |||||| |||| |||| || | |||||| || ||| | Sbjct 11907 GATACCTTCCTTATCTTGAATTTTGGCTTTC-ACATTTTCAATCGTGTCGGATGGTTCTA 11965 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||| || ||||| ||||| | ||||||||| || || ||||| Sbjct 11966 CTTCCAACGTAATAGTTTTTCCTGTGAGCGTTTTTACGAAAATTTGCAT 12014 >seq37113 Length=2419 Score = 104 bits (114), Expect = 2e-17 Identities = 92/115 (80%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||||||||| | || || ||||| | ||| |||||||| ||||||||||||| Sbjct 654 CACCACCTCTCAATCTCAATACTAAATGCAAAGTCGATTCTTTTTGGATGTTGTAATCGG 713 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATC 33635 | || || ||| | || || | |||||| ||||| ||||||||||| |||||||| Sbjct 714 AAAGGGTACGTCCATCTTCGAGTTGTTTACCGGCGAAAATCAAACGTTGCTGATC 768 >seq2470 Length=523 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | |||||| |||||||| ||||| |||||||| || || |||||| | Sbjct 235 CCACCGCGAAGACGTAAGACCAAATGAAGAGTCGATTCTTTTTGAATATTATAATCGCTG 294 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || || ||||||||||| || ||||| | |||||||| | || Sbjct 295 AGAGTACGGCCATCTTCTAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCAGGTGGA 354 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| |||||| || || ||| | || | || ||| | || || Sbjct 355 ATGCCTTCTTTGTCCTGAATTTT-TGCTTTAACGTTTTCGATCGTATCGGACGGCTCGAC 413 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || || | ||||| || ||||| |||||| Sbjct 414 TTCCAAAGTGATGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCATA 462 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || || | |||| ||| || || || ||||| || || || ||| Sbjct 6 ACCACCACGTAACCGAAGGACCAGATGGAGGGTTGATTCCTTTTGGATATTATAGTCGCT 65 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| || | || ||||||||||| ||||| ||||| || | || || || | || Sbjct 66 CAATGTACGGCCATCTTCCAATTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCCGGTGG 125 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| || || |||||| |||| |||| || | |||||| || ||||| Sbjct 126 GATACCTTCCTTATCTTGAATTTTGGCTTTC-ACATTTTCAATCGTGTCGGATGGTTCCA 184 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || || ||||| || || | ||||||||| || || ||||| Sbjct 185 CTTCCAATGTAATAGTTTTTCCGGTGAGCGTTTTTACGAAAATTTGCAT 233 >seq38187 Length=9425 Score = 102 bits (112), Expect = 5e-17 Identities = 155/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||||||||||||||| || ||| |||||||| ||||| |||||| | || || | Sbjct 3201 ACGTAACACCAAATGAAGTGTGGATTCTTTTTGAATGTTATAATCGCTCAAGGTACGGCC 3142 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 ||| | ||||||||| ||||| || || || || || ||||| | || | ||||||||| Sbjct 3141 GTCTTTCAATTGTTTACCGGCGAAGATTAATCGTTGTTGATCCGGTGGGATACCTTCTTT 3082 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 || ||||| | | || | || | || |||| || || || | | |||| Sbjct 3081 ATCCTGTATTTT-AGCCTTGACGTTTTCAATAGTATCGCATGGCTCGACTTTCAATGTGA 3023 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||||||| |||| |||||| || || || |||||| Sbjct 3022 TTGTTTTACCGGTTAGCGTTTTAACGAAAATTTGCATA 2985 >seq62430 Length=23789 Score = 87.8 bits (96), Expect = 1e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| || ||||| || ||||| | || |||||||| || ||||||||||| Sbjct 14419 CCACCTCTTAATCGTAATACTAAATGCAACGTAGATTCTTTTTGGATATTGTAATCGGAA 14360 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || ||| | || || | |||||| || || ||||||||||| || ||||| | || Sbjct 14359 AGAGTTCGTCCATCTTCGAGTTGTTTACCAGCGAAAATCAAACGTTGTTGATCAGGAGGA 14300 Query 33643 ACACCT 33648 | |||| Sbjct 14299 ATACCT 14294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328436165509440