Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq39894 127 5e-24 seq2470 118 3e-21 seq27679 96.9 8e-15 >seq39894 Length=23042 Score = 127 bits (140), Expect = 5e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||||||||| |||||||| |||||||||||||| ||| || || Sbjct 12695 CAGATTTTTGTAAAAACGCTCACTGGAAAAACCATCACTTTGGAAGTCGAACCGTCCGAT 12636 Query 206233 ACAGTCGAATCAGTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || ||||| ||||| |||||| ||||| || |||||||| ||| || || || Sbjct 12635 ACGATCGAAAACGTAAAAGCAAAA-ATTCAGGACAAAGAAGGCATTCCACCTGATCAACA 12577 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | || | ||||| |||||||| || |||||||| || | ||| | |||||| || | Sbjct 12576 ACGATTGATCTTTGCCGGAAAACAATTGGAAGACGGTCGAACTCTCAGCGATTATAATAT 12517 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || ||||||||||| | || || | ||||| Sbjct 12516 TCAAAAGGAATCTACTCTTCATTTGGTCTTACGTCTTCG 12478 Score = 123 bits (136), Expect = 6e-23 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| |||||||| |||||||||||||| ||| || || || ||||| Sbjct 11771 AAAACTCTCACCGGAAAAACCATCACTTTGGAAGTCGAACCGTCGGATACGATCGAAAAC 11712 Query 206245 GTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 ||||| || ||| || ||||| |||||||| || || ||| ||| || | ||||| Sbjct 11711 GTAAAAGCGAAA-ATACAAGATAAAGAAGGCATCCCACCCGACCAGCAACGATTAATCTT 11653 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||| || || |||||||| || | || ||| ||||| || | ||||||||||| Sbjct 11652 CGCCGGTAAACAATTGGAAGACGGCCGTACCTTGAGTGATTATAATATTCAGAAAGAGTC 11593 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 || |||||| | || || | ||||| Sbjct 11592 CACACTTCACTTGGTGTTACGTCTTCG 11566 Score = 118 bits (130), Expect = 3e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || || || |||||||||||||| || || || || ||||| Sbjct 12227 AAAACTCTCACCGGCAAGACCATCACTTTGGAAGTCGAGCCGTCCGATACGATCGAAAAC 12168 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||||||| ||||| || |||||||| ||| || || |||||| | ||||| Sbjct 12167 GTTAAAGCAAAA-ATTCAGGACAAAGAAGGCATTCCACCTGATCAGCAAAGATTGATCTT 12109 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||| ||||| |||||||| | ||| | |||||| || | || || || || Sbjct 12108 CGCCGGAAAACAGTTAGAAGATGGCCGTACTCTCAGCGATTATAATATTCAAAAGGAATC 12049 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||| | || || | ||||| Sbjct 12048 TACTCTTCATTTGGTCTTACGTCTTCG 12022 Score = 114 bits (126), Expect = 3e-20 Identities = 144/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 |||||||||||||||||||| || || |||||||| ||| || ||||| | ||| Sbjct 11999 AAAACGCTCACAGGAAAAACTATTACGTTGGAAGTAGAACCATCCGACACGATTGAAAAT 11940 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| |||||||| || ||||| || |||||| |||||| | || || Sbjct 11939 GTGAAAGCCAAA-ATTCAAGATAAGGAAGGTATCCCACCGGACCAACAAAGATTAATTTT 11881 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||| || || ||||||||||| | || ||| ||| || || |||| || || || Sbjct 11880 CGCCGGCAAACAATTGGAAGATGGCCGTACATTGAGCGACTATAATATCCAAAAGGAATC 11821 Query 206364 TACTCTTCACCTTGT 206378 || || || || || Sbjct 11820 AACCCTCCATCTGGT 11806 Score = 84.2 bits (92), Expect = 5e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || || || ||||||||||| || || || ||||| |||| Sbjct 12911 AAAACTCTCACCGGCAAGACCATCACTTTGGAGGTCGAGCCGTCCGACACGATCGAGAAC 12852 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| || || || || ||||| || |||||| |||||| | || || Sbjct 12851 GTGAAAGCTAAA-ATCCAGGATAAGGAAGGTATCCCACCGGACCAACAAAGATTAATTTT 12793 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||| || || ||||||||||| | || ||| ||| || || | || || || || Sbjct 12792 CGCCGGCAAACAATTGGAAGATGGCCGTACGTTGAGCGACTATAATATTCAAAAGGAATC 12733 Query 206364 TACTCTTCACCTTGT 206378 || || || || || Sbjct 12732 AACCCTCCATCTGGT 12718 >seq2470 Length=523 Score = 118 bits (130), Expect = 3e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || || || |||||||||||||| || || || || ||||| Sbjct 446 AAAACTCTCACCGGCAAGACCATCACTTTGGAAGTCGAGCCGTCCGATACGATCGAAAAC 387 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||||||| ||||| || |||||||| ||| || || |||||| | ||||| Sbjct 386 GTTAAAGCAAAA-ATTCAGGACAAAGAAGGCATTCCACCTGATCAGCAAAGATTGATCTT 328 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||| ||||| |||||||| | ||| | |||||| || | || ||||| || Sbjct 327 CGCCGGAAAACAGTTAGAAGATGGCCGTACTCTCAGCGATTATAATATTCAAAAAGAATC 268 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| | || || | ||||| Sbjct 267 GACTCTTCATTTGGTCTTACGTCTTCG 241 Score = 114 bits (126), Expect = 3e-20 Identities = 144/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||||||||| |||||||| || || |||||||||||| || ||||| | ||| Sbjct 218 AAAACGCTCACCGGAAAAACTATTACATTGGAAGTGGAACCATCCGACACGATTGAAAAT 159 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| |||||||| || ||||| || |||||| |||||| | || || Sbjct 158 GTGAAAGCCAAA-ATTCAAGATAAGGAAGGTATCCCACCGGACCAACAAAGATTAATTTT 100 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||| || || ||||||||||| | || ||| ||| || || |||| || || || Sbjct 99 CGCCGGCAAACAATTGGAAGATGGCCGTACATTGAGCGACTATAATATCCAAAAGGAATC 40 Query 206364 TACTCTTCACCTTGT 206378 || || || || || Sbjct 39 AACCCTCCATCTGGT 25 >seq27679 Length=10833 Score = 96.9 bits (106), Expect = 8e-15 Identities = 137/191 (72%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| || || | ||||| ||| || || | | ||| Sbjct 2026 AAAACATTGACTGGTAAAACTATTACCCTCGAAGTCGAACCCTCAGATTCGATTGAAAAT 2085 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||||| ||||| ||||| || ||||| || |||||| ||| | | |||||| Sbjct 2086 GTAAAGCAGAAGATCCAAGATAAGGAAGGCATCCCACCGGACCAGCAACGTTTGATCTTC 2145 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAG---AG 206361 || |||||||| ||||||||||| |||||| || | || ||||| | ||||||| | Sbjct 2146 GCTGGAAAGCAATTGGAAGATGGCAGGACTCTGTCTGACTACAATATTCAGAAAGGTAAC 2205 Query 206362 TCTACTCTTCA 206372 |||||| |||| Sbjct 2206 TCTACT-TTCA 2215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180808446024297