Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq18352 132 5e-26 seq39894 118 1e-21 seq38187 118 1e-21 seq2470 113 4e-20 >seq18352 Length=35742 Score = 132 bits (146), Expect = 5e-26 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 || || || | ||||||||||| | | ||||||||||||||||||||||| | ||| Sbjct 19299 CGTAATCGGAGAACCAAATGTAAGGTCGACTCTTTTTGAATGTTGTAGTCTGATAGGGTT 19240 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 | |||||||| || || |||| | || | ||| || |||||||| ||||| ||| Sbjct 19239 CTACCGTCTTCGAGTTGCTTTCCGGCGAAAATCAAACGTTGCTGATCTGGCGGTATACCT 19180 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 |||||||| |||||| ||| | | ||| | || ||| | || || || |||| Sbjct 19179 TCTTTATCCTGAATTTTCGCTTTAACGTTTTCAATGGTGTCGCTTGGTTCAACCTCGAGG 19120 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | |||||| ||||||| ||||||| ||| |||||||| Sbjct 19119 GTGATCGTTTTCCCAGTCAACGTTTTTACGAAGATCTGCAT 19079 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||||| | || |||||||| ||||| || || | || | | Sbjct 20433 CGCAATACCAAATGTAACGTAGATTCTTTTTGGATGTTATAATCCGAAAGCGTTCTGCCA 20374 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 |||||||||||||| || | | || ||||| || ||||| ||||| |||||||||||| Sbjct 20373 TCTTCGAGCTGTTTGCCAGCGAAAATAAGACGTTGCTGATCGGGAGGAATGCCTTCTTTA 20314 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| || | | ||| | |||||| | ||||| || |||| || | Sbjct 20313 TCTTGAATTTTAGCCTTGACGTTTTCGATGGTATCGCTAGGCTCGACCTCGAGAGTGATT 20254 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || |||| ||||| | |||||||||||| Sbjct 20253 GTTTTTCCGGTCAAGGTTTTCACGAAAATCTGCAT 20219 Score = 116 bits (128), Expect = 4e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| || | ||||||||| | | || || ||||| ||||||||||| | ||| | Sbjct 20209 CAAACGAAGAACCAAATGGAGCGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTTCT 20150 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||||||||||| |||| | |||| ||| || || || |||||||||||||| Sbjct 20149 ACCGTCTTCGAGCTGTTTTCCGGCGAAAATTAAACGTTGCTGGTCCGGAGGTATGCCTTC 20090 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 |||||| ||||| || | | ||| | || || | ||||| ||||| | || Sbjct 20089 TTTATCTTGGATTTTGGCCTTGACATTTTCGATGGTGTCACTGGGCTCTACTTCCAGGGT 20030 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | |||||| ||||| | |||||||| |||||| ||||| Sbjct 20029 AATCGTTTTGCCAGTTAAAGTTTTTACGAAAATTTGCAT 19991 Score = 113 bits (124), Expect = 4e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| || || | |||||||||| | |||| ||||||||||||||||| || || || Sbjct 19984 ACGTAAACGAAGTACCAAATGTAGGGTTGATTCTTTTTGAATGTTGTAATCCGACAATGT 19925 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||||| |||||||||| | || ||||| || || || ||||| || || Sbjct 19924 TCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGCTGGTCCGGAGGGATACC 19865 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 |||||||| ||||| || | | ||| | || || | ||||| ||||||| Sbjct 19864 CTCTTTATCTTGGATTTTGGCCTTGACGTTTTCGATGGTGTCACTGGGCTCAACTTCGAG 19805 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||| || || | |||||| | |||||| ||||| Sbjct 19804 GGTGATGGTTTTGCCGGTTAAAGTTTTAACGAAAATTTGCAT 19763 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || |||||||| |||||||||||| | ||| | |||||||| |||||||||| Sbjct 19728 GATTCTTTTTGGATGTTGTAGTCGGAAAGGGTTCTTCCGTCTTCGAGTTGTTTACCGGCG 19669 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| ||||| ||||| || || ||||| ||||| || || |||||| || | Sbjct 19668 AAGATAAGACGTTGTTGGTCAGGTGGTATACCTTCCTTGTCCTGAATTTTGGCCTTGACG 19609 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||| ||| | || || ||||||| ||| | |||||||| || | ||||| Sbjct 19608 TTCTCAATAGTGTCGCTTGGTTCGACTTCGAGCGTGATAGTTTTACCGGTTAATGTTTTC 19549 Query 132110 ATGAAAATCTGCAT 132123 | |||||| ||||| Sbjct 19548 ACGAAAATTTGCAT 19535 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || |||||||||||||| ||||| | || || ||||||||| ||||| |||| Sbjct 19500 GATTCTTTTTGAATGTTATAGTCCGAAAGTGTGCGGCCATCTTCGAGTTGTTTGCCGGCG 19441 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || ||||| || || || || || || || ||||| || ||||||| || | Sbjct 19440 AAAATGAGACGTTGCTGGTCGGGGGGAATTCCCTCTTTGTCTTGAATTTTTGCCTTGACA 19381 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||| ||| | || || ||||||| ||| | |||||| ||||||| || || Sbjct 19380 TTTTCTATAGTGTCGCTGGGTTCGACTTCGAGCGTGATCGTTTTGCCAGTCAAGGTCTTC 19321 Query 132110 ATGAAAATCTGCAT 132123 | |||||| ||||| Sbjct 19320 ACGAAAATTTGCAT 19307 >seq39894 Length=23042 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || || ||||| || | | |||||||| ||||| || || || |||| |||||| Sbjct 11572 CGTAACACCAAGTGAAGTGTGGACTCTTTCTGAATATTATAATCACTCAAGGTACGGCCG 11631 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | |||||||||| |||||| || || || || || || |||||||||||| Sbjct 11632 TCTTCCAATTGTTTACCGGCGAAGATTAATCGTTGCTGGTCGGGTGGGATGCCTTCTTTA 11691 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| ||| | | ||| | ||||| | ||| || ||||| | || | Sbjct 11692 TCTTGTATTTTCGCTTTTACGTTTTCGATCGTATCCGACGGTTCGACTTCCAAAGTGATG 11751 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || || |||||||||| |||||||||||| Sbjct 11752 GTTTTTCCGGTGAGAGTTTTTACGAAAATCTGCAT 11786 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || || |||||||| | | || || |||||||| || || ||||| | || || Sbjct 12484 CGTAAGACCAAATGAAGAGTAGATTCCTTTTGAATATTATAATCGCTGAGAGTTCGACCG 12543 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | ||||| |||| | |||| | || |||||||| || || ||||||||||| Sbjct 12544 TCTTCCAATTGTTTTCCGGCAAAGATCAATCGTTGTTGATCAGGTGGAATGCCTTCTTTG 12603 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||||| ||| | | ||| | ||||||| ||| || ||||| | || | Sbjct 12604 TCCTGAATTTTTGCTTTTACGTTTTCGATCGTATCGGACGGTTCGACTTCCAAAGTGATG 12663 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||| || ||||||| ||||||||||| Sbjct 12664 GTTTTTCCAGTGAGCGTTTTTACAAAAATCTGCAT 12698 Score = 113 bits (124), Expect = 4e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| || || | |||| ||| | | |||| || ||||| || || |||||||| | || Sbjct 12249 ACGTAACCGAAGGACCAGATGGAGGGTTGATTCCTTTTGGATATTATAGTCGCTGAGTGT 12308 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||| || ||||||||||||| | || | || ||||| || || || || || Sbjct 12309 ACGACCATCCTCAAGCTGTTTACCGGCGAAAATCAATCGTTGTTGGTCGGGTGGGATACC 12368 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| ||||| |||||| ||||| | || | || |||| || || ||||| | Sbjct 12369 TTCCTTATCTTGAATTTTGGCTTTCACGTTCTCAATCGTGTCGGATGGTTCGACTTCTAA 12428 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | |||||| || |||| ||||||| |||||| ||||| Sbjct 12429 CGTAATCGTTTTTCCTGTCAATGTTTTTACGAAAATTTGCAT 12470 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || || |||||||| | | || || |||||||| || || ||||| | ||||| | Sbjct 12028 CGTAAGACCAAATGAAGAGTAGATTCCTTTTGAATATTATAATCGCTGAGAGTACGGCCA 12087 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | |||||| |||| |||| | | || ||||| || || ||||||||||| Sbjct 12088 TCTTCTAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCAGGTGGAATGCCTTCTTTG 12147 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||||| ||| | | ||| | ||||||| |||||| ||||| | || | Sbjct 12148 TCCTGAATTTTTGCTTTAACGTTTTCGATCGTATCGGACGGCTCGACTTCCAAAGTGATG 12207 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || |||||||| | ||| || ||||| Sbjct 12208 GTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCAT 12242 >seq38187 Length=9425 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || || |||||||| | | || |||||||||||||| || ||||||| |||||| Sbjct 3200 CGTAACACCAAATGAAGTGTGGATTCTTTTTGAATGTTATAATCGCTCAAGGTACGGCCG 3141 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 |||| | |||||||||| |||||| || |||||||| || || || ||||||||| Sbjct 3140 TCTTTCAATTGTTTACCGGCGAAGATTAATCGTTGTTGATCCGGTGGGATACCTTCTTTA 3081 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| || | | ||| | ||||||| ||||| |||| | || | Sbjct 3080 TCCTGTATTTTAGCCTTGACGTTTTCAATAGTATCGCATGGCTCGACTTTCAATGTGATT 3021 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||||| || || ||||| | |||||| ||||| Sbjct 3020 GTTTTACCGGTTAGCGTTTTAACGAAAATTTGCAT 2986 >seq2470 Length=523 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || || |||||||| | | || ||||||||||| || || ||||| | ||||| | Sbjct 247 CGTAAGACCAAATGAAGAGTCGATTCTTTTTGAATATTATAATCGCTGAGAGTACGGCCA 306 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | |||||| |||| |||| | | || ||||| || || ||||||||||| Sbjct 307 TCTTCTAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCAGGTGGAATGCCTTCTTTG 366 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||||| ||| | | ||| | ||||||| |||||| ||||| | || | Sbjct 367 TCCTGAATTTTTGCTTTAACGTTTTCGATCGTATCGGACGGCTCGACTTCCAAAGTGATG 426 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || |||||||| | ||| || ||||| Sbjct 427 GTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCAT 461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476212890062520