Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq17270 102 3e-18 seq17879 98.7 3e-17 seq34046 87.8 6e-14 >seq17270 Length=39849 Score = 102 bits (112), Expect = 3e-18 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 26975 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGA 27034 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 27035 TCCCGGGTTTCGGC 27048 >seq17879 Length=18961 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 3814 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 3873 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 3874 CCGGGTTTCGGC 3885 >seq34046 Length=13227 Score = 87.8 bits (96), Expect = 6e-14 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| |||||||||||||||||||||||| ||||| | |||||| Sbjct 12437 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCGATCCCGGG 12380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15838010004765