Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq39894 141 8e-29 seq18352 140 3e-28 seq2470 132 4e-26 seq38187 118 9e-22 seq62430 95.1 1e-14 seq37113 91.5 1e-13 >seq39894 Length=23042 Score = 141 bits (156), Expect = 8e-29 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||||||||| | || |||||| | ||||| | ||||||||| | | Sbjct 12698 ATGCAGATTTTTGTAAAAACGCTCACTGGAAAAACCATCACTTTGGAAGTCGAACCGTCC 12639 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| | |||||| ||||||| || ||||| || || || || ||||| Sbjct 12638 GATACGATCGAAAACGTAAAAGCAAAAATTCAGGACAAAGAAGGCATTCCACCTGATCAA 12579 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| || | || | | ||| |||||| | ||||| | | ||| | |||||||||| ||| Sbjct 12578 CAACGATTGATCTTTGCCGGAAAACAATTGGAAGACGGTCGAACTCTCAGCGATTATAAT 12519 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 |||||||| ||||| || ||||||| || ||| Sbjct 12518 ATTCAAAAGGAATCTACTCTTCATTTGGTCTTA 12486 Score = 129 bits (142), Expect = 5e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || ||||||||||| || |||||| |||| ||| | ||||||||| | | Sbjct 12470 ATGCAAATTTTCGTAAAAACATTGACAGGAAAAACGATTACGTTAGAAGTCGAACCATCC 12411 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | || ||| |||||| ||||| || ||||| || ||||| || Sbjct 12410 GACACGATTGAGAACGTGAAAGCCAAAATTCAAGATAAGGAAGGTATCCCACCCGACCAA 12351 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| || | |||| || ||| ||||| || || |||| | | | ||||||| || ||| Sbjct 12350 CAACGATTGATTTTCGCCGGTAAACAGCTTGAGGATGGTCGTACACTCAGCGACTATAAT 12291 Query 25355 ATTCAAAAAGAATCCACCATTCAT 25378 || ||||| ||||| ||| | ||| Sbjct 12290 ATCCAAAAGGAATCAACCCTCCAT 12267 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| | ||||| || | ||||| | |||||||| | | Sbjct 12242 ATGCAAATCTTCGTTAAAACTCTCACCGGCAAGACCATCACTTTGGAAGTCGAGCCGTCC 12183 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| | || ||| ||||||| || ||||| || || || || |||||| Sbjct 12182 GATACGATCGAAAACGTTAAAGCAAAAATTCAGGACAAAGAAGGCATTCCACCTGATCAG 12123 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | || | || ||| ||||| | ||||||| | | | |||||||||| ||| Sbjct 12122 CAAAGATTGATCTTCGCCGGAAAACAGTTAGAAGATGGCCGTACTCTCAGCGATTATAAT 12063 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 |||||||| ||||| || ||||||| || ||| Sbjct 12062 ATTCAAAAGGAATCTACTCTTCATTTGGTCTTA 12030 Score = 100 bits (110), Expect = 3e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | || || ||||| | ||||| || | ||||| | || ||||| | Sbjct 12930 CAAGATGCAGATCTTCGTTAAAACTCTCACCGGCAAGACCATCACTTTGGAGGTCGAGCC 12871 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 ||| || |||||| | || ||| ||||| ||||| || ||||| || || || Sbjct 12870 GTCCGACACGATCGAGAACGTGAAAGCTAAAATCCAGGATAAGGAAGGTATCCCACCGGA 12811 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 || |||||| | |||| || |||||||||| | ||||||| | | | ||||| || Sbjct 12810 CCAACAAAGATTAATTTTCGCCGGCAAACAATTGGAAGATGGCCGTACGTTGAGCGACTA 12751 Query 25351 CAATATTCAAAAAGAATCCACCATTCAT 25378 ||||||||||| ||||| ||| | ||| Sbjct 12750 TAATATTCAAAAGGAATCAACCCTCCAT 12723 >seq18352 Length=35742 Score = 140 bits (154), Expect = 3e-28 Identities = 172/233 (74%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | || |||||||| || || || ||| ||||||| |||| || ||| | Sbjct 19075 CAAAATGCAGATCTTCGTAAAAACGTTGACTGGGAAAACGATCACCCTCGAGGTTGAACC 19134 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | ||| || || || | || ||| |||||| |||||||| ||||||||||| || Sbjct 19135 AAGCGACACCATTGAAAACGTTAAAGCGAAAATTCAGGATAAAGAAGGTATACCGCCAGA 19194 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGAT 25348 ||||||| | | |||| || ||| || ||||||||||| | ||||| | ||| || Sbjct 19195 TCAGCAACGTTTGATTTTCGCCGGAAAGCAACTCGAAGACGGTAGAACCCTATCA--GAC 19252 Query 25349 TACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||| ||||||||||| || ||| | ||||| || | |||| ||||||| Sbjct 19253 TACAACATTCAAAAAGAGTCGACCTTACATTTGGTTCTCCGATTACGAGGAGG 19305 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || || || || ||| |||||||| ||||||||||| ||| | Sbjct 19307 ATGCAAATTTTCGTGAAGACCTTGACTGGCAAAACGATCACGCTCGAAGTCGAACCCAGC 19366 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| || | || || ||||||| || |||||||| || || ||||| ||| Sbjct 19367 GACACTATAGAAAATGTCAAGGCAAAAATTCAAGACAAAGAGGGAATTCCCCCCGACCAG 19426 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | ||||||| || |||||||||||||||||||| | | | || || || Sbjct 19427 CAACGTCTCATTTTCGCCGGCAAACAACTCGAAGATGGCCGCACACTTTCGGACTATAAC 19486 Query 25355 ATTCAAAAAGAATCCAC 25371 ||||||||||||||||| Sbjct 19487 ATTCAAAAAGAATCCAC 19503 Score = 136 bits (150), Expect = 4e-27 Identities = 158/211 (75%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| |||||||| ||| | ||||| ||||||| || ||| Sbjct 19763 ATGCAAATTTTCGTTAAAACTTTAACCGGCAAAACCATCACCCTCGAAGTTGAGCCCAGT 19822 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || || ||||| |||||||||||||| || || || ||| Sbjct 19823 GACACCATCGAAAACGTCAAGGCCAAAATCCAAGATAAAGAGGGTATCCCTCCGGACCAG 19882 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGA--AATGTCAGCGATTACA 25352 ||| | ||||||| || ||| |||||||||||||| | || | |||| ||||||| Sbjct 19883 CAACGTCTCATTTTCGCCGGTAAACAACTCGAAGACGGCCGAACATTGTC--GGATTACA 19940 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGT 25383 | |||||||||||||| ||| | ||||| || Sbjct 19941 ACATTCAAAAAGAATCAACCCTACATTTGGT 19971 Score = 134 bits (148), Expect = 1e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || |||||||||||||| ||| | |||||| ||||||||||| | | | Sbjct 19535 ATGCAAATTTTCGTGAAAACATTAACCGGTAAAACTATCACGCTCGAAGTCGAACCAAGC 19594 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| ||| | || || |||||| || || || |||||||| || || || Sbjct 19595 GACACTATTGAGAACGTCAAGGCCAAAATTCAGGACAAGGAAGGTATACCACCTGACCAA 19654 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | || || | || ||| |||||||||||||| | |||| | ||| ||||| Sbjct 19655 CAACGTCTTATCTTCGCCGGTAAACAACTCGAAGACGGAAGAACCCTTTCCGACTACAAC 19714 Query 25355 ATTCAAAAAGAATCCAC 25371 || |||||||||||||| Sbjct 19715 ATCCAAAAAGAATCCAC 19731 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || ||||| || ||||||||| | ||||| |||| ||||| | | | Sbjct 20219 ATGCAGATTTTCGTGAAAACCTTGACCGGAAAAACAATCACTCTCGAGGTCGAGCCTAGC 20278 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| | || || |||||| |||||||| || || || ||||||||| Sbjct 20279 GATACCATCGAAAACGTCAAGGCTAAAATTCAAGATAAAGAAGGCATTCCTCCCGATCAG 20338 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | || |||| || |||||||| |||||||||| |||| | ||||| || Sbjct 20339 CAACGTCTTATTTTCGCTGGCAAACAGCTCGAAGATGGCAGAACGCTTTCGGATTATAAC 20398 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 || ||||||||||| || | ||||| || || Sbjct 20399 ATCCAAAAAGAATCTACGTTACATTTGGTATT 20430 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || |||||||| ||||| || ||| |||| || | ||||| || ||| Sbjct 19991 ATGCAAATTTTCGTAAAAACTTTAACTGGCAAAACGATTACCCTGGAAGTAGAGCCCAGT 20050 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || || ||||| |||||||| || ||||| || || ||| Sbjct 20051 GACACCATCGAAAATGTCAAGGCCAAAATCCAAGATAAAGAAGGCATACCTCCGGACCAG 20110 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | |||| || ||| ||||| |||||||| | ||||| | || ||||| Sbjct 20111 CAACGTTTAATTTTCGCCGGAAAACAGCTCGAAGACGGTAGAACCCTTTCTGACTACAAC 20170 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || ||||| ||||| || | ||||| || | | ||||||||||||| Sbjct 20171 ATCCAAAAGGAATCTACGCTCCATTTGGTTCTTCGTTTGAGAGGAGGAA 20219 >seq2470 Length=523 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| | ||||| || | ||||| | |||||||| | | Sbjct 461 ATGCAAATCTTCGTTAAAACTCTCACCGGCAAGACCATCACTTTGGAAGTCGAGCCGTCC 402 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| | || ||| ||||||| || ||||| || || || || |||||| Sbjct 401 GATACGATCGAAAACGTTAAAGCAAAAATTCAGGACAAAGAAGGCATTCCACCTGATCAG 342 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | || | || ||| ||||| | ||||||| | | | |||||||||| ||| Sbjct 341 CAAAGATTGATCTTCGCCGGAAAACAGTTAGAAGATGGCCGTACTCTCAGCGATTATAAT 282 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 |||||||||||||| || ||||||| || ||| Sbjct 281 ATTCAAAAAGAATCGACTCTTCATTTGGTCTTA 249 >seq38187 Length=9425 Score = 118 bits (130), Expect = 9e-22 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA- 25233 |||||| | || || ||||| ||||||| ||| | ||||| | ||||||| |||| Sbjct 2986 ATGCAAATTTTCGTTAAAACGCTAACCGGTAAAACAATCACATTGAAAGTCGA-GCCATG 3044 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||||||| || | || || ||||| |||||||| ||||| || || ||||| Sbjct 3045 CGATACTATTGAAAACGTCAAGGCTAAAATACAGGATAAAGAAGGTATCCCACCGGATCA 3104 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| || | || | || ||| |||||| | |||| | | | | |||||||| || Sbjct 3105 ACAACGATTAATCTTCGCCGGTAAACAATTGAAAGACGGCCGTACCTTGAGCGATTATAA 3164 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 ||||||||||||||||| ||||||| |||||| Sbjct 3165 CATTCAAAAAGAATCCACACTTCATTTGGTGTTA 3198 >seq62430 Length=23789 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 25277 GGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGA 25336 ||||| || || ||||| ||| | | |||| || || |||||||||||||||| || Sbjct 14295 GGTATTCCTCCTGATCAACAACGTTTGATTTTCGCTGGTAAACAACTCGAAGATGGACGA 14354 Query 25337 AATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGA 25396 | | | |||||||||||| ||||||||||| || | |||||||| ||| |||| ||| Sbjct 14355 ACTCTTTCCGATTACAATATCCAAAAAGAATCTACGTTGCATTTAGTATTACGATTAAGA 14414 Query 25397 GGAGG 25401 || || Sbjct 14415 GGTGG 14419 >seq37113 Length=2419 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 25277 GGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGA 25336 || || || || ||||||||| | | |||| || ||| |||||||||||||||| | Sbjct 780 GGCATTCCTCCTGATCAGCAACGTTTGATTTTCGCCGGTAAACAACTCGAAGATGGACGT 721 Query 25337 AATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGA 25396 | | ||||||||| || ||||||||||| || | |||||||| || ||||||||| Sbjct 720 ACCCTTTCCGATTACAACATCCAAAAAGAATCGACTTTGCATTTAGTATTGAGATTGAGA 661 Query 25397 GGAGG 25401 || || Sbjct 660 GGTGG 656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444722429046240