Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq18352 118 1e-21 seq39894 105 6e-18 >seq18352 Length=35742 Score = 118 bits (130), Expect = 1e-21 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || || ||||| | | ||||||||||| || ||| |||||||||||||| || | Sbjct 19305 CCTCCTCGTAATCGGAGAACCAAATGTAAGGTCGACTCTTTTTGAATGTTGTAGTCTGAT 19246 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||||| |||| || || ||||| || || || ||||| || ||||| || | || Sbjct 19245 AGGGTTCTACCGTCTTCGAGTTGCTTTCCGGCGAAAATCAAACGTTGCTGATCTGGCGGT 19186 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAG-TTGCCACCGTGTCGCTCGATTCCAC 35688 | | || || ||| ||| ||| |||| | | || | | |||||||| | ||| || Sbjct 19185 ATACCTTCTTTATCC-TGAATTTTCGCTTTAACGTTTTCAATGGTGTCGCTTGGTTCAAC 19127 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 ||| | ||||||||||| || ||||| ||||| || || ||||||||| || Sbjct 19126 CTCGAGGGTGATCGTTTTCCCAGTCAACGTTTTTACGAAGATCTGCATTTTG 19075 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| |||||||| | | |||||||||| || || ||||||||||||||||| | Sbjct 19991 TTCCTCCACGTAAACGAAGTACCAAATGTAGGGTTGATTCTTTTTGAATGTTGTAATCCG 19932 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 ||| ||||| |||| || || || ||||| || || || | || |||||||||| || Sbjct 19931 ACAATGTTCGGCCGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGCTGGTCCGGAG 19872 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 | | | ||| || || ||| || ||| | || | | ||||| || | || | Sbjct 19871 GGATACCCTCTTTATCTTGGATTTTGGCCTTGACGTTTTCGATGGTGTCACTGGGCTCAA 19812 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || | ||||| ||||| || || |||||||| || || || ||||| Sbjct 19811 CTTCGAGGGTGATGGTTTTGCCGGTTAAAGTTTTAACGAAAATTTGCAT 19763 Score = 105 bits (116), Expect = 6e-18 Identities = 169/240 (70%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 35500 CTCTTTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTT 35559 || || ||| ||||| || | | ||| ||||||||||||||| || ||||| ||||| Sbjct 20455 CTATTAATTGCCACCGCGAAGTCGCAATACCAAATGTAACGTAGATTCTTTTTGGATGTT 20396 Query 35560 GTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTG 35619 ||||| | | |||| | || || ||||| || || || || || | || ||||| Sbjct 20395 ATAATCCGAAAGCGTTCTGCCATCTTCGAGCTGTTTGCCAGCGAAAATAAGACGTTGCTG 20336 Query 35620 GTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGTTGCCACCGTGTCGC 35678 || | ||||| || || ||| | ||| ||| | ||| | || | | || |||| Sbjct 20335 ATCGGGAGGAATGC-CTTCTTTATCTTGAATTTTAGCCTTGACGTTTTCGATGGTATCGC 20277 Query 35679 TCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 | | || ||||| | ||||| ||||| || ||||| |||||||| || |||||||||| Sbjct 20276 TAGGCTCGACCTCGAGAGTGATTGTTTTTCCGGTCAAGGTTTTCACGAAAATCTGCATTC 20217 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || ||||||||||| || || | | || || | || || || || || || || || Sbjct 19497 TCTTTTTGAATGTTATAGTCCGAAAGTGTGCGGCCATCTTCGAGTTGTTTGCCGGCGAAA 19438 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGT 35664 || | || |||||||| | |||| | ||| ||||| ||| |||||| || | | | Sbjct 19437 ATGAGACGTTGCTGGTCGGGGGGAATTCCCTCTTTGTCT-TGAATTTTTGCCTTGACATT 19379 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | |||||||| | ||| || || | |||||||||||| || ||||| || ||||| Sbjct 19378 TTCTATAGTGTCGCTGGGTTCGACTTCGAGCGTGATCGTTTTGCCAGTCAAGGTCTTCAC 19319 Query 35725 AAATATCTGCAT 35736 || || ||||| Sbjct 19318 GAAAATTTGCAT 19307 >seq39894 Length=23042 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 ||||||| || | | || |||||||| | ||| ||||||||||| || |||||| Sbjct 12470 TTCCACCGCGAAGACGTAAGACCAAATGAAGAGTAGATTCCTTTTGAATATTATAATCGC 12529 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | ||||| |||| |||| || || || ||||| ||||| || || || || | | Sbjct 12530 TGAGAGTTCGACCGTCTTCCAATTGTTTTCCGGCAAAGATCAATCGTTGTTGATCAGGTG 12589 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 ||| || || |||||| ||| |||||| || | || | | ||| ||| || ||| Sbjct 12590 GAATGCCTTCTTTGTCC-TGAATTTTTGCTTTTACGTTTTCGATCGTATCGGACGGTTCG 12648 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||| ||||| ||||| || || | ||||| ||||| |||||||| Sbjct 12649 ACTTCCAAAGTGATGGTTTTTCCAGTGAGCGTTTTTACAAAAATCTGCAT 12698 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 ||||||| || | | || |||||||| | ||| ||||||||||| || |||||| Sbjct 12014 TTCCACCGCGAAGACGTAAGACCAAATGAAGAGTAGATTCCTTTTGAATATTATAATCGC 12073 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | || || | || || | ||| || || || || ||||| | ||||| || | | Sbjct 12074 TGAGAGTACGGCCATCTTCTAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCAGGTG 12133 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAG-TTGCCACCGTGTCGCTCGATTCC 35686 ||| || || |||||| ||| |||||||| | | || | | ||| ||| || || Sbjct 12134 GAATGCCTTCTTTGTCC-TGAATTTTTGCTTTAACGTTTTCGATCGTATCGGACGGCTCG 12192 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||| ||||| || || || || | |||||| || || || ||||| Sbjct 12193 ACTTCCAAAGTGATGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCAT 12242 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||||||||||| | |||| ||| | || |||||||| || || || ||| Sbjct 12244 CCACCACGTAACCGAAGGACCAGATGGAGGGTTGATTCCTTTTGGATATTATAGTCGCTG 12303 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || || ||||| ||||| || || ||||| || || ||||| | || Sbjct 12304 AGTGTACGACCATCCTCAAGCTGTTTACCGGCGAAAATCAATCGTTGTTGGTCGGGTGGG 12363 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | ||||| | | ||| ||| || |||| | | | ||||||| | ||| || Sbjct 12364 ATACCTTCCTTAT-CTTGAATTTTGGCTTTCACGTTCTCAATCGTGTCGGATGGTTCGAC 12422 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || | ||| |||||||| || ||||| ||||| || || || ||||||| Sbjct 12423 TTCTAACGTAATCGTTTTTCCTGTCAATGTTTTTACGAAAATTTGCATTC 12472 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||||||||||| | |||| ||| | || ||||||||||| || || ||| | Sbjct 12700 CCACCACGTAACCGAAGGACCAGATGGAGGGTTGATTCCTTTTGAATATTATAGTCGCTC 12759 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || |||| || || || || || || || | || ||||||| || Sbjct 12760 AACGTACGGCCATCTTCCAATTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCCGGTGGG 12819 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | ||||| ||| ||| ||| || |||| | | | ||||||| || || || Sbjct 12820 ATACCTTCCTTATCCTGGAT-TTTAGCTTTCACGTTCTCGATCGTGTCGGACGGCTCGAC 12878 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| ||||| || || || || | |||||| || || |||||||| Sbjct 12879 CTCCAAAGTGATGGTCTTGCCGGTGAGAGTTTTAACGAAGATCTGCAT 12926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450416866153560