Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq7785 176 6e-39 seq24804 158 2e-33 seq47140 143 4e-29 seq28943 107 3e-18 >seq7785 Length=64017 Score = 176 bits (194), Expect = 6e-39 Identities = 316/460 (69%), Gaps = 4/460 (1%) Strand=Plus/Plus Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 || || || || |||||| ||| ||| || ||||||||| | || ||||||| ||| Sbjct 8829 TCAAACTCTTCACCCCAACAATCGAACAACCCGGGACATTCACTGGGGCACATCA--GAC 8886 Query 69577 CACACAT--CATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAA 69634 || | |||||| | ||| | | ||||||| |||||||||||| | ||| | Sbjct 8887 TCCATTTTACATCATTTTCAACCCTTCTCATAAACTCATCGGGAATCCATAAAGCGTAGA 8946 Query 69635 AGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCA 69694 | | |||||| | | | ||||| || || | ||| ||| | || || | || || | Sbjct 8947 ATAAATCTCTTGCACGAGACTCTTCTTTACCGGAATTCTTTCTCAGTTCCAAGAAATCGA 9006 Query 69695 TAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTC 69754 |||| | |||||||| ||||||| || || || | | ||||||| ||| || |||| Sbjct 9007 AAATAACCGAATGCCAAGGTTCTAAGTAAATGGCAAAAGCACCCGGTCTTTTGTTGCCTC 9066 Query 69755 CCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAG 69814 | ||||| | |||||||| |||||||| || || | ||||| |||| | ||| |||| Sbjct 9067 CTTGATCGACATATCTGGCTGTGTTATTGTAAACGCGGAGCATAGGAACGAGACCGTTAG 9126 Query 69815 ATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGAC 69874 || ||| |||||||||| ||||| || | || | || ||| | || Sbjct 9127 ATACACCGTTTGTTCCAGCGATATAGCTATTGGTAGCTCTGATGCAGTGTATATGCACAC 9186 Query 69875 CTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCT 69934 | ||||| || || ||| || || ||||||||| |||| |||| ||||||| | Sbjct 9187 CAATTCCACCGGCTGATTTCGATATCAGAGCACAATTCGTCAAGGTGTGGAATATACCTT 9246 Query 69935 CTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGA 69974 | || ||||||||| |||| | ||||||||||| || Sbjct 9247 CGATACTATCATCTTCCATGGCCAAGAGAAAACAGCTGGA 9286 >seq24804 Length=9356 Score = 158 bits (174), Expect = 2e-33 Identities = 150/191 (79%), Gaps = 3/191 (2%) Strand=Plus/Minus Query 39668 AATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCA 39727 || || | |||||||||||| || |||||||||||||||||||| || |||||| |||| Sbjct 6972 AAAGTCAATCCAGGCATTAGGCCTCGCTTTTTGAGCCAAAATATTGCGGCAAAACTTCCA 6913 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTG---TA 39784 ||||||||||| ||||| || |||||||| || | | ||| ||||| || | | | Sbjct 6912 GAAAAGAAGATACCTTCGACAGCTGCAAACGCTATGATTCTTTCTCCAAAAGTGGCGTTT 6853 Query 39785 TCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCT 39844 | || | ||||| ||| | |||||||| |||||| |||| ||||||||||| ||||| Sbjct 6852 TGATCAGCAATCCATTTCAGAGCCCAATCTGCTTTCCTCTTGACACAAGGCATGGTTTCA 6793 Query 39845 ATAGCATTAAA 39855 ||||| || || Sbjct 6792 ATAGCGTTGAA 6782 Score = 145 bits (160), Expect = 1e-29 Identities = 167/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 ||| ||||| || || || || || | |||||||||||||||||| | || ||||| | Sbjct 6693 ATCCTTAACGTAAGTGTCGATCAATAAACTATACATTTCTGAATGTACATTCTCAATAGT 6634 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTC 39996 || ||||||||||| ||| |||| ||||||| |||||| || ||| | | || | ||| Sbjct 6633 GATTTGAAATCCGTAGAAAAATCTGGCTTCAGGAATTTGAACTTCTTGAAAGAAACGTTC 6574 Query 39997 CGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAAT 40056 | | ||||||||| || || |||||| || || |||||||| || || ||| ||| Sbjct 6573 GACTAGATTTTCATTAACGATACCATCAGAGGCAGCGAAAAATGCTAAAACGTGTGAAAT 6514 Query 40057 AAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATC 40101 ||| | ||||| |||||| | | ||| | ||| || ||| ||| Sbjct 6513 AAATTTCTTTTCTTCGGGTTTAAGTTTCTCCCAATCTCTGAAATC 6469 >seq47140 Length=38879 Score = 143 bits (158), Expect = 4e-29 Identities = 159/212 (75%), Gaps = 9/212 (4%) Strand=Plus/Minus Query 39653 ATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATG 39712 |||||||| ||| || || | ||||||||| ||||| | ||| |||||||||||||| Sbjct 14717 ATTAATTCATTACTGAAAGTCAATCCAGGCATAAGACCTCTCTTCTTGAGCCAAAATATC 14658 Query 39713 GCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCT 39772 || |||||| ||| ||||||||||| ||||| || |||||||| || | | || ||| Sbjct 14657 GCCGCAAAACTTCCCGAAAAGAAGATTCCTTCGACAGCTGCAAACGCTATTATCCTTTCT 14598 Query 39773 CCGTAACTTGTATCATTATG------TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTT 39826 || || ||| | || || |||||| || ||||||||| ||||| |||| Sbjct 14597 CCAAAA---GTAGCGTTTTGGTCAGCTATCCATCTCAATGCCCAATCTGCTTTTCTCTTC 14541 Query 39827 ACACAAGGCATTGTTTCTATAGCATTAAAGAG 39858 || |||||||||||||| ||||| || || || Sbjct 14540 ACGCAAGGCATTGTTTCGATAGCGTTGAATAG 14509 Score = 129 bits (142), Expect = 8e-25 Identities = 163/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 39878 TCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCC 39937 ||||| || || ||||| || || | || |||||||| ||||| | |||||||| | Sbjct 14418 TCTTTTACGTAAGTATCGATCAATAAGCTGTACATTTCCGAATGTACATTTTCAATAGTG 14359 Query 39938 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCC 39997 || ||||||||||| || ||| ||||||| ||||||||||||| | | || | ||| Sbjct 14358 ATTTGAAATCCGTAGAAGAATCGGGCTTCAGGAATTTGTACCTCTTGAAAGAAACGTTCG 14299 Query 39998 GCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATA 40057 | ||||| ||||| || || ||||| || || ||||| |||||||| || ||| Sbjct 14298 ACTAAATTCTCATTAACGATACCATCGGACGCTGCGAAAAACGCCAATACGTGCGAAATG 14239 Query 40058 AAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATC 40101 || | ||||| || ||| ||| ||| | ||| || ||| ||| Sbjct 14238 AACTTCTTTTCTTCTGGTTTCAGTTTCTCCCAATCTCTGAAATC 14195 >seq28943 Length=35018 Score = 107 bits (118), Expect = 3e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 || ||||| || ||||| |||| | ||| || ||||| ||||||||||| | |||| Sbjct 13244 TGGAATTCTCCTGATAAGACTCGTCTAGTATACATATTCGAAGTATATGGTTCGAAAGAT 13303 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 || |||||||| | |||||||||||| || ||||| ||||||||||| | | | | Sbjct 13304 TCGTTATTTCCTAAAATTTGAGCAGTGGAAGCAGTAGGCATAGGTGCGAGTAGAAGTGAA 13363 Query 68839 TTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGAT 68898 ||||| | ||||| | | | ||||| ||||| | ||| ||||| | | || Sbjct 13364 TTTCTGACACCATATTGTTTTATTTTTTCTTTCAACGCAGCCCAGTCCCATAACTTGGAG 13423 Query 68899 GGTACAACATTCCAAAGATCGTATTGTAGAAT 68930 || ||||||||| | |||||| || | ||| Sbjct 13424 GGAGTAACATTCCACATATCGTACTGCAAAAT 13455 Score = 93.3 bits (102), Expect = 6e-14 Identities = 121/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 70009 GTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGAT 70068 |||||||| || || ||||| || |||| || | | ||| || |||||||| |||| Sbjct 14950 GTAGGAGAAGCATGCGTGAAGTATCTTTCGGATAATAAATTATAGGTTTCAATCGCTGCG 15009 Query 70069 TCTATATCC-CACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTC 70127 || ||||| ||| | |||||||| | || || | ||||||||| ||||| |||||||| Sbjct 15010 TCGATATCTTCACCG-TGAATTCCGACAGCAACTCTCATCAACATGTGCTGTGGTCGTTC 15068 Query 70128 TACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGT 70172 ||| || ||||||||||| | || || ||||| | ||| Sbjct 15069 AACCACCTTTCCGTTTATTTTCAATAAATACGACTTTTCTAAAGT 15113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686334741729480