Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq7785 190 2e-43 seq23762 125 6e-24 seq47140 116 3e-21 seq24804 107 2e-18 >seq7785 Length=64017 Score = 190 bits (210), Expect = 2e-43 Identities = 252/348 (72%), Gaps = 4/348 (1%) Strand=Plus/Plus Query 40862 TGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGA 40921 || ||||||||| ||||||||||| ||||| || | | ||||||| ||||| | || | Sbjct 36921 TGTAGGTGATCTCGGTCCTGTTTACGGATTCCAATGGAGACATTTCGGAGCTGAGTACAA 36980 Query 40922 CACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATAC 40981 ||| || | ||||| || || |||||| |||||||| |||| ||| |||||||| Sbjct 36981 AGACATGCACACCGATTACACGAACAAAGGAGTGGATCAACTACAAAACGTCATAGATAC 37040 Query 40982 GATTA--AATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGAC 41039 |||| ||| | || || | |||| ||||| || || ||||||||||| || Sbjct 37041 CATTAGGAATA--ACCCAGACTGTAGACGAATAATCTTATGTGCGTGGAACCCTCTAGAT 37098 Query 41040 GTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGT 41099 ||| | ||||| || || |||||||||| ||| |||||||||| || ||| Sbjct 37099 TTACCTAAAATGGCCTTACCTCCTTGTCATTGCTTAGTACAGTTTTACGCAGTAAACGGT 37158 Query 41100 GAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAAC 41159 ||| ||||||| ||| ||||||| | || | ||| ||||| |||| || || || || Sbjct 37159 GAATTGTCATGCCAAATGTATCAGCGTTCTGCTGATATGGGTTTAGGCGTACCATTCAAT 37218 Query 41160 ATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAAT 41207 || || ||||| | ||||||| || ||||| || ||||| |||||| Sbjct 37219 ATCGCTAGTTACTCCTTGCTCACTTACATGATCGCTCACGTCACCAAT 37266 Score = 149 bits (164), Expect = 5e-31 Identities = 235/335 (70%), Gaps = 4/335 (1%) Strand=Plus/Plus Query 40865 AGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACAC 40924 ||||||||| ||||| ||||||||||| || | | ||||||||||||| | || | Sbjct 38440 AGGTGATCTAGGTCCCGTTTATGGATTCCAATGGAGACATTTTGGAGCCGAGTACAAAGA 38499 Query 40925 TATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGAT 40984 ||| || | ||||| || ||||| | |||||| || | ||| |||||||| || Sbjct 38500 CATGCACACCGATTACGTGAACAAAGGCGTCGATCAACTAAAAAACGTCATAGATACAAT 38559 Query 40985 TAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACA 41044 |||| |||| ||| || ||||| | ||| | |||||||| || | || Sbjct 38560 TAAAAATAATCCAAATAATGAACAAATAATCATATGCACTTGGAACCCTCTAGA--TTCA 38617 Query 41045 TTT--GATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAA 41102 | | ||||| || || |||||||||| ||| ||||| |||| || |||||| Sbjct 38618 TCTAAAATGGCCTTACCTCCTTGTCATTGCTTAGCACAGTTCTACGCGGTAAACGGTGAA 38677 Query 41103 CTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATA 41162 |||| |||||| |||| ||| | || | ||| ||||| ||||| | || ||| | || Sbjct 38678 TTGTCGTGTCAAGTGTACCAACGTTCTGCTGATATGGGTTTAGGGATACCTTTTGATATT 38737 Query 41163 GCGAGTTATGCTCTGCTCACGTATATGATTGCACA 41197 || ||||| || ||||||| |||||||| || || Sbjct 38738 GCAAGTTACGCCTTGCTCACTTATATGATCGCTCA 38772 Score = 113 bits (124), Expect = 4e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 40687 ATCAGTTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGT 40746 ||||||||||| || | || |||||| | | ||||||||||| | | ||||||| | | Sbjct 36685 ATCAGTTTCCGCTGTTGACCACAAAACGAGTATTTTGGAAAGGTGTAGTAGAAGAATTAT 36744 Query 40747 TATGGTTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAAGAGGAGTGCACATTT 40806 ||||||| |||| ||| | ||| ||| | || ||||||| || | ||||||| | |||| Sbjct 36745 TATGGTTCATCAGAGGATCTACGAATTCGAAAGAATTATCCGACAAAGGAGTGAAAATTT 36804 Query 40807 GGAATGCGCACAGTTCTAAAACATATTTGTCTAGCATAGGATTACAAGATAGGGATGAAG 40866 |||| || | ||| | | | ||| ||| | ||||||| ||||||| || |||| Sbjct 36805 GGAACCCGAATAGTACAAGAGAATACTTGGATTCTTTAGGATTCAAAGATAGAGAAGAAG 36864 Query 40867 GT 40868 || Sbjct 36865 GT 36866 >seq23762 Length=38695 Score = 125 bits (138), Expect = 6e-24 Identities = 149/201 (74%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 19330 GGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTA 19389 ||||||||||| || || | ||||| ||||| || ||||| |||||||||||| Sbjct 17722 GGATGTAAACACGTGAAGGGTATATTGCTATATGGACCTCCGGGAACTGGAAAAACATTG 17663 Query 19390 ATTGCGAGAGAACTTAGTAAATTACTTA---CAAAACAACCTCCCAAAATTGTAAATGGT 19446 || || | || || ||||| | | | | | | |||| ||||||||||||||| Sbjct 17662 ATGGCTCGTCAAATTGGTAAAATGTTGAATGCGAGAGAACCA---AAAATTGTAAATGGT 17606 Query 19447 CCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCT 19506 ||| |||| || |||||||||| || |||| |||| |||| | || || |||||||| Sbjct 17605 CCTCAAATATTGGATAAATATGTTGGAGAATCCGAAGCAAATATTCGTCGATTGTTTGCA 17546 Query 19507 GACGCTGAAGAAGAACAAAAA 19527 ||||||||||| ||| ||||| Sbjct 17545 GACGCTGAAGAGGAAGAAAAA 17525 >seq47140 Length=38879 Score = 116 bits (128), Expect = 3e-21 Identities = 155/210 (74%), Gaps = 9/210 (4%) Strand=Plus/Plus Query 44042 TTTAATGCGATAGAAACAGTACCT-GCGATTAAACATAAAGCAGACTGGGCCCTTAAATG 44100 || || || || |||||| | ||| ||| | | | |||||||| ||||| | | ||| Sbjct 14512 TTCAACGCTATCGAAACAATGCCTTGCGTGAAGAGA-AAAGCAGATTGGGCATTGAGATG 14570 Query 44101 GATAAATTC---AAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGG 44157 |||| | ||| | | ||||||||||| | | | |||||||||| ||| ||||| Sbjct 14571 GATAGCTGACCAAAACGCTACTTTTGGAGAAAGGATAATAGCGTTTGCAGCTGTCGAAGG 14630 Query 44158 CATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCC 44217 || |||||||| ||| |||||||| ||||||||| | ||||| ||||| | ||||| Sbjct 14631 AATCTTCTTTTCGGGAAGTTTTGCGGCGATATTTTGGCTCAAGAAGAGAGGTCTTATGCC 14690 Query 44218 TGGGTTGACGTTTTCA--AATGAGTTAATA 44245 ||| ||||| ||||| ||||| |||||| Sbjct 14691 TGGATTGAC--TTTCAGTAATGAATTAATA 14718 Score = 113 bits (124), Expect = 4e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 43820 AAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGG 43879 |||||| ||||||| | || || || || ||||||||||| || ||| ||| || Sbjct 14219 AAACCAGAAGAAAAGAAGTTCATTTCGCACGTATTGGCGTTTTTCGCAGCGTCCGATGGT 14278 Query 43880 ATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGA 43939 || || ||||| ||||| || || || ||||| || ||| | || ||||| ||| Sbjct 14279 ATCGTTAATGAGAATTTAGTCGAACGTTTCTTTCAAGAGGTACAAATTCCTGAAGCCCGA 14338 Query 43940 TGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTG 43999 | || || || |||||||| | || |||||| | ||||||||||||||||| | || Sbjct 14339 TTCTTCTACGGATTTCAAATCACTATTGAAAATGTACATTCGGAAATGTACAGCTTATTG 14398 Query 44000 ATAGATACGTACATCAAAGA 44019 || ||||| ||| | ||||| Sbjct 14399 ATCGATACTTACGTAAAAGA 14418 Score = 86.0 bits (94), Expect = 5e-12 Identities = 105/143 (73%), Gaps = 3/143 (2%) Strand=Plus/Plus Query 44492 CAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAA 44551 |||||||| || ||||||||||||||||| || ||| | || ||||| || || ||||| Sbjct 15103 CAAAACCCATTCGATTTTATGGAAAATATATCCTTGAATGGTAAAACGAATTTCTTTGAG 15162 Query 44552 AAACGCGTTGGAGAATATCAGCGAATGGGCGTCATGAT---AACAAGTGACAATAAATTT 44608 || | ||||||||||| || || || |||||| | || | || ||| ||||| Sbjct 15163 AAGAGAGTTGGAGAATACAAGAAAAGTGGAGTCATGTTCCCCTCAGGCGAAAATGAATTT 15222 Query 44609 ACTACGGATGAAGATTTCTAATT 44631 | ||||| ||||| ||||| Sbjct 15223 AAATTGGATGCCGATTTTTAATT 15245 >seq24804 Length=9356 Score = 107 bits (118), Expect = 2e-18 Identities = 126/166 (76%), Gaps = 7/166 (4%) Strand=Plus/Plus Query 44078 AAAGCAGACTGGGCCCTTAAATGGATAAAT--TCAAAT-GATTCTTTTGGAGAACGACTT 44134 |||||||| ||||| || |||||||| | ||||| | ||||||||||| || | Sbjct 6818 AAAGCAGATTGGGCTCTGAAATGGATTGCTGATCAAAACGCCACTTTTGGAGAAAGAATC 6877 Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194 | |||||||||| ||| ||||| || |||||||| ||| ||||| || ||||||||| Sbjct 6878 ATAGCGTTTGCAGCTGTCGAAGGTATCTTCTTTTCTGGAAGTTTTGCCGCAATATTTTGG 6937 Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCA--AATGA 44238 | || || ||||| | |||||||| ||||| ||||| ||||| Sbjct 6938 CTCAAAAAGCGAGGCCTAATGCCTGGATTGAC--TTTCAGTAATGA 6981 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 43820 AAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGG 43879 ||||| ||||||| | ||||| || ||||| || ||||| ||||| || || Sbjct 6493 AAACCCGAAGAAAAGAAATTTATTTCACACGTTTTAGCATTTTTCGCTGCCTCTGATGGT 6552 Query 43880 ATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGA 43939 || || ||||||||| | || || || |||||||||||| | || ||||| || Sbjct 6553 ATCGTTAATGAAAATCTAGTCGAACGTTTCTTTCAAGAAGTTCAAATTCCTGAAGCCAGA 6612 Query 43940 TGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTG 43999 | ||| || || |||||||| | || || ||| | ||||| |||||||| ||| | || Sbjct 6613 TTTTTCTACGGATTTCAAATCACTATTGAGAATGTACATTCAGAAATGTATAGTTTATTG 6672 Query 44000 ATAGATACGTACATCAAAGAT 44020 || || || ||| | || ||| Sbjct 6673 ATCGACACTTACGTTAAGGAT 6693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397132145026285