Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudococcus_20longispinus_20[genbank_20GCA_5F900064475.1_202016-03- 27] 66,857 sequences; 284,990,201 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq18352 165 7e-36 seq39894 107 2e-18 seq38187 100 2e-16 seq2470 96.9 3e-15 seq47140 95.1 1e-14 seq7785 82.4 6e-11 >seq18352 Length=35742 Score = 165 bits (182), Expect = 7e-36 Identities = 179/235 (76%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || || || | ||||||||||| || || ||||||||||| ||||| || | Sbjct 19989 CCTCCACGTAAACGAAGTACCAAATGTAGGGTTGATTCTTTTTGAATGTTGTAATCCGAC 19930 Query 27081 A-TGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | |||| || |||||||||| |||||||||||| |||||||||| || || ||||| || Sbjct 19929 AATGTTCGGC-CGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGCTGGTCCGGAGG 19871 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | |||||||||||| ||| ||| || | | |||| | ||||| ||| ||||| Sbjct 19870 GATACCCTCTTTATCTTGGATTTTGGCCTTGACGTTTTCGATGGTGTCACTGGGCTCAAC 19811 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 ||| || || || | |||||| || | |||||| || || ||||||||| || || Sbjct 19810 TTCGAGGGTGATGGTTTTGCCGGTTAAAGTTTTAACGAAAATTTGCATACCTCCT 19756 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || || || | ||||||||||| || || ||||||||||| |||||||| Sbjct 19305 CCTCCTCGTAATCGGAGAACCAAATGTAAGGTCGACTCTTTTTGAATGTTGTAGTCTGAT 19246 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | |||||||||| || || |||||| |||| | ||| || ||||| ||||| Sbjct 19245 AGGGTTCTACCGTCTTCGAGTTGCTTTCCGGCGAAAATCAAACGTTGCTGATCTGGCGGT 19186 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| |||||||| || || ||| | | |||| | ||||| | | |||||| Sbjct 19185 ATACCTTCTTTATCCTGAATTTTCGCTTTAACGTTTTCAATGGTGTCGCTTGGTTCAACC 19126 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||| || |||| ||||| || ||||| ||||| Sbjct 19125 TCGAGGGTGATCGTTTTCCCAGTCAACGTTTTTACGAAGATCTGCAT 19079 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | ||| || | |||||||| | |||||| || ||||| || |||||||| Sbjct 20217 CCTCCTCTCAAACGAAGAACCAAATGGAGCGTAGATTCCTTTTGGATGTTGTAGTCAGAA 20158 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | |||||||||||||||| |||||| |||| | ||| || || ||||| || Sbjct 20157 AGGGTTCTACCGTCTTCGAGCTGTTTTCCGGCGAAAATTAAACGTTGCTGGTCCGGAGGT 20098 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || |||||||| ||| ||| || | |||| | ||||| ||| || ||| Sbjct 20097 ATGCCTTCTTTATCTTGGATTTTGGCCTTGACATTTTCGATGGTGTCACTGGGCTCTACT 20038 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | |||||| || | |||||| || || |||||||| Sbjct 20037 TCCAGGGTAATCGTTTTGCCAGTTAAAGTTTTTACGAAAATTTGCAT 19991 Score = 118 bits (130), Expect = 9e-22 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGT-TGCGCTCGTCTTC 27097 ||||| || | || || ||||||||||| || ||||| | | || |||| | ||||| Sbjct 19515 ACCAAGTGGAGAGTGGATTCTTTTTGAATGTTATAGTC-CGAAAGTGTGCGGCCATCTTC 19457 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 ||| ||||| |||||| |||||||||| || || || || || | |||||||| || Sbjct 19456 GAGTTGTTTGCCGGCGAAAATGAGACGTTGCTGGTCGGGGGGAATTCCCTCTTTGTCTTG 19397 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 || || || | |||||| |||||| ||| ||| ||||| || || || | ||| Sbjct 19396 AATTTTTGCCTTGACATTTTCTATAGTGTCGCTGGGTTCGACTTCGAGCGTGATCGTTTT 19337 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 ||| |||| || ||||| || ||||||||| || || Sbjct 19336 GCCAGTCAAGGTCTTCACGAAAATTTGCATACCTCCT 19300 Score = 118 bits (130), Expect = 9e-22 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 27017 ATTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGT- 27075 |||||| ||||| | ||||||||||||||||||||||| |||||||| || || || | Sbjct 20449 ATTGCCACCGCGAAGTCGCAATACCAAATGTAACGTAGATTCTTTTTGGATGTTATAATC 20390 Query 27076 CGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCG 27135 || ||| || | |||||||||||||| || ||| |||| ||||| || ||||| | Sbjct 20389 CGAAAGCGTTCTGC-CATCTTCGAGCTGTTTGCCAGCGAAAATAAGACGTTGCTGATCGG 20331 Query 27136 GCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTT 27195 | || | || |||||||| || || || | | |||| | || || | | | Sbjct 20330 GAGGAATGCCTTCTTTATCTTGAATTTTAGCCTTGACGTTTTCGATGGTATCGCTAGGCT 20271 Query 27196 CAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || ||||| || | ||| || |||| |||||||| || || ||||| Sbjct 20270 CGACCTCGAGAGTGATTGTTTTTCCGGTCAAGGTTTTCACGAAAATCTGCAT 20219 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || |||||||| || ||||||||| | | | | |||||||| Sbjct 19743 ACCAAGTGGAGAGTGGATTCTTTTTGGATGTTGTAGTCGGAAAGGGTTCTTCCGTCTTCG 19684 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || |||||||||||| | || ||||| ||||| || || || | ||| || || || Sbjct 19683 AGTTGTTTACCGGCGAAGATAAGACGTTGTTGGTCAGGTGGTATACCTTCCTTGTCCTGA 19624 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || ||| || | | | || | |||||| | | ||| ||||| || || |||| ||| Sbjct 19623 ATTTTGGCCTTGACGTTCTCAATAGTGTCGCTTGGTTCGACTTCGAGCGTGATAGTTTTA 19564 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 || || | |||||||| || ||||||||| || || Sbjct 19563 CCGGTTAATGTTTTCACGAAAATTTGCATACCTCCT 19528 >seq39894 Length=23042 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || || ||||| | |||| ||| | || || || ||||| ||||| |||||||| Sbjct 12244 CCACCACGTAACCGAAGGACCAGATGGAGGGTTGATTCCTTTTGGATATTATAGTCGCTG 12303 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | || || ||||||||||||||| |||| | || ||||| || || || Sbjct 12304 AGTGTACGACCATCCTCAAGCTGTTTACCGGCGAAAATCAATCGTTGTTGGTCGGGTGGG 12363 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| || ||||| || ||| ||||| | | || | ||||| | | ||| ||| Sbjct 12364 ATACCTTCCTTATCTTGAATTTTGGCTTTCACGTTCTCAATCGTGTCGGATGGTTCGACT 12423 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| || || | ||| || |||| ||||| || || |||||||| Sbjct 12424 TCTAACGTAATCGTTTTTCCTGTCAATGTTTTTACGAAAATTTGCAT 12470 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || || ||||| | |||| ||| | || || || ||||||||||| ||||||||| Sbjct 12700 CCACCACGTAACCGAAGGACCAGATGGAGGGTTGATTCCTTTTGAATATTATAGTCGCTC 12759 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | ||||| | ||||| |||||| |||| | | ||||| ||||| || Sbjct 12760 AACGTACGGCCATCTTCCAATTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCCGGTGGG 12819 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| || ||||| ||| || ||||| | | || | ||||| | | || || Sbjct 12820 ATACCTTCCTTATCCTGGATTTTAGCTTTCACGTTCTCGATCGTGTCGGACGGCTCGACC 12879 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | ||| || | ||||| || |||||||| || ||||| ||||| Sbjct 12880 TCCAAAGTGATGGTCTTGCCGGTGAGAGTTTTAACGAAGATCTGCAT 12926 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| | || || |||||||| | ||||| || ||||||||||| || ||||| Sbjct 12016 CCACCGCGAAGACGTAAGACCAAATGAAGAGTAGATTCCTTTTGAATATTATAATCGCTG 12075 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | ||||| | |||||| |||||| | || | | || ||||| || || Sbjct 12076 AGAGTACGGCCATCTTCTAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCAGGTGGA 12135 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || ||||| || || || ||| | | |||| | || || | | || ||| Sbjct 12136 ATGCCTTCTTTGTCCTGAATTTTTGCTTTAACGTTTTCGATCGTATCGGACGGCTCGACT 12195 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | ||| || | ||||| || |||||||| || |||||||||||| Sbjct 12196 TCCAAAGTGATGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCATA 12243 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| | || || |||||||| | ||||| || ||||||||||| || ||||| Sbjct 12472 CCACCGCGAAGACGTAAGACCAAATGAAGAGTAGATTCCTTTTGAATATTATAATCGCTG 12531 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || ||||||| | ||||| ||||| | || | || |||||||| || || Sbjct 12532 AGAGTTCGACCGTCTTCCAATTGTTTTCCGGCAAAGATCAATCGTTGTTGATCAGGTGGA 12591 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || ||||| || || || ||| | | |||| | || || | | ||| ||| Sbjct 12592 ATGCCTTCTTTGTCCTGAATTTTTGCTTTTACGTTTTCGATCGTATCGGACGGTTCGACT 12651 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | ||| || | ||| || || || ||||| ||||| || |||||| Sbjct 12652 TCCAAAGTGATGGTTTTTCCAGTGAGCGTTTTTACAAAAATCTGCATA 12699 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 || || ||||| || | || || ||||| |||||||| || || |||| | | || || Sbjct 11572 CGTAACACCAAGTGAAGTGTGGACTCTTTCTGAATATTATAATCACTCAAGGTACGGCCG 11631 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| | |||||||||||| | || | || || || || || || | || |||||| Sbjct 11632 TCTTCCAATTGTTTACCGGCGAAGATTAATCGTTGCTGGTCGGGTGGGATGCCTTCTTTA 11691 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || || || ||| | | |||| | || || | | ||| ||||| | ||| || Sbjct 11692 TCTTGTATTTTCGCTTTTACGTTTTCGATCGTATCCGACGGTTCGACTTCCAAAGTGATG 11751 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||| || || |||||||| || || || |||||| Sbjct 11752 GTTTTTCCGGTGAGAGTTTTTACGAAAATCTGCATA 11787 >seq38187 Length=9425 Score = 100 bits (110), Expect = 2e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 || || |||||||| | || || ||||||||||| || || ||||||| | | || || Sbjct 3200 CGTAACACCAAATGAAGTGTGGATTCTTTTTGAATGTTATAATCGCTCAAGGTACGGCCG 3141 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 |||| | |||||||||||| | || | || ||||||||||| || | ||| |||||| Sbjct 3140 TCTTTCAATTGTTTACCGGCGAAGATTAATCGTTGTTGATCCGGTGGGATACCTTCTTTA 3081 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTC-TGTGGCTTCAACTTCTAGAGTTAT 27211 || || || || | | |||| | ||| || |||| || |||| | || || Sbjct 3080 TCCTGTATTTTAGCCTTGACGTTTTCAATAGTATCGCATGGC-TCGACTTTCAATGTGAT 3022 Query 27212 AGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||| || || || ||||| || || ||||||||| Sbjct 3021 TGTTTTACCGGTTAGCGTTTTAACGAAAATTTGCATA 2985 >seq2470 Length=523 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| | || || |||||||| | || || |||||||||||||| || ||||| Sbjct 235 CCACCGCGAAGACGTAAGACCAAATGAAGAGTCGATTCTTTTTGAATATTATAATCGCTG 294 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | ||||| | |||||| |||||| | || | | || ||||| || || Sbjct 295 AGAGTACGGCCATCTTCTAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCAGGTGGA 354 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || ||||| || || || ||| | | |||| | || || | | || ||| Sbjct 355 ATGCCTTCTTTGTCCTGAATTTTTGCTTTAACGTTTTCGATCGTATCGGACGGCTCGACT 414 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | ||| || | ||||| || |||||||| || |||||||||||| Sbjct 415 TCCAAAGTGATGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCATA 462 >seq47140 Length=38879 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 108598 TCGTTACTGAACGTCAAACCCGGCATAATACCTTTCGTTTTAATGTAAAATATTGCCGCA 108657 || |||||||| ||||| || ||||||| |||| || | || | ||||||| |||||| Sbjct 14711 TCATTACTGAAAGTCAATCCAGGCATAAGACCTCTCTTCTTGAGCCAAAATATCGCCGCA 14652 Query 108658 AAACTGCCGGaaaaaaaTATTCCCTCGACAATTGCAAACGCAACCATTCTTT 108709 ||||| || ||||| || ||||| |||||| ||||||||| | || |||| Sbjct 14651 AAACTTCCCGAAAAGAAGATTCCTTCGACAGCTGCAAACGCTATTATCCTTT 14600 >seq7785 Length=64017 Score = 82.4 bits (90), Expect = 6e-11 Identities = 145/211 (69%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 130763 TGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGAT 130822 ||||| || ||| || || |||| | ||| || || ||| |||||||||| | Sbjct 7756 TGAAATTCGCCACTAAGTACTCGTCGTAAGTACATATTTGAAGTGTACGGTTCAAAACTT 7815 Query 130823 TCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAA 130882 || || || || || ||||| || |||| || || ||||| || | ||| || ||| Sbjct 7816 TCATTATTTCCTAAAATTTGAGCGGTAGAAGCCGTTGGCATAGGAGCTAATAAAAGTGAA 7875 Query 130883 TTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTA 130942 || || | |||| | | ||||||| |||||| | ||| | ||||| ||||| Sbjct 7876 TTTCGGACACCGAATTTGGCGATTTTTTCTTTCAATACGGTCCAGTTCCATAACGAGGTT 7935 Query 130943 GGTTTGACATTGTTCCACATATCAAATTGTA 130973 ||| | || ||||||||||||| |||||| Sbjct 7936 GGTGTCAC---GTTCCACATATCATATTGTA 7963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424588155084984